Experiment: 1VJI

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	6	277	Methyl ether, Polyethylene glycol 5k,Calcium Chloride, MES, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K, pH 6.0

Crystal Properties
Matthews coefficient	Solvent content
1.86	33.9

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 46.688	α = 90
b = 88.066	β = 90
c = 149.334	γ = 90

Symmetry
Space Group	C 2 2 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray		CCD	MARRESEARCH	Bent cylindrical Si-mirror (Rh coating)	2003-10-26	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	APS BEAMLINE 14-BM-D	0.96400	APS	14-BM-D

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2	50	98.2	0.07				20816

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2	2.05	92		0.875

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION		THROUGHOUT	2.003	43.85	19708	1072	98.1	0.21	0.2062	0.293	RANDOM	31.114

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.713			1.89		-1.176

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_1_deg	7.111
r_scangle_it	4.218
r_scbond_it	3.045
r_mcangle_it	1.966
r_angle_refined_deg	1.894
r_mcbond_it	1.219
r_nbtor_refined	0.318
r_nbd_refined	0.225
r_symmetry_vdw_refined	0.224
r_symmetry_hbond_refined	0.205

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_1_deg	7.111
r_scangle_it	4.218
r_scbond_it	3.045
r_mcangle_it	1.966
r_angle_refined_deg	1.894
r_mcbond_it	1.219
r_nbtor_refined	0.318
r_nbd_refined	0.225
r_symmetry_vdw_refined	0.224
r_symmetry_hbond_refined	0.205
r_xyhbond_nbd_refined	0.166
r_chiral_restr	0.138
r_bond_refined_d	0.024
r_gen_planes_refined	0.01

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2748
Nucleic Acid Atoms
Solvent Atoms	107
Heterogen Atoms	31

Software

Software
Software Name	Purpose
AMoRE	phasing
REFMAC	refinement
DENZO	data reduction
SCALEPACK	data scaling
PDB_EXTRACT	data extraction

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.