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Crystal structure of sulX in complex with FMN and sulfamethoxazole
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 298 24% PEG 500, 1.2 mM Zinc sulfate, 0.1 M MES pH6.5
Crystal Properties Matthews coefficient Solvent content 3.86 68.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 133.039 α = 90 b = 133.039 β = 90 c = 138.994 γ = 120
Symmetry Space Group P 62 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2025-10-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL19U1 1 SSRF BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.46 50 99.9 0.9978 19.35 35.68 27666
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.46 2.53 0.9378 4.22
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.46 48.1 26218 1412 98.84 0.19712 0.19401 0.1983 0.25603 0.253 RANDOM 68.011
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2 1 2 -6.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.244 r_dihedral_angle_4_deg 18.811 r_dihedral_angle_3_deg 17.125 r_long_range_B_refined 9.952 r_long_range_B_other 9.951 r_scangle_other 8.014 r_mcangle_it 7.723 r_mcangle_other 7.721 r_dihedral_angle_1_deg 6.689 r_scbond_it 5.92
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.244 r_dihedral_angle_4_deg 18.811 r_dihedral_angle_3_deg 17.125 r_long_range_B_refined 9.952 r_long_range_B_other 9.951 r_scangle_other 8.014 r_mcangle_it 7.723 r_mcangle_other 7.721 r_dihedral_angle_1_deg 6.689 r_scbond_it 5.92 r_scbond_other 5.918 r_mcbond_it 5.84 r_mcbond_other 5.817 r_angle_refined_deg 1.557 r_angle_other_deg 1.295 r_chiral_restr 0.063 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3017 Nucleic Acid Atoms Solvent Atoms 69 Heterogen Atoms 63
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction SAINT data reduction SAINT data scaling PHASER phasing