29UU | pdb_000029uu

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	6BA4

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		293	PEG, HEPES

Crystal Properties
Matthews coefficient	Solvent content
2.5	50.72

Symmetry
Space Group	P 21 21 21

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M-F		2019-06-21	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	PETRA III, DESY BEAMLINE P11	1.0332	PETRA III, DESY	P11

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.3	46.46	97.7	0.056	0.064	0.998	11.5	4.4		79136			22.5

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.3	1.38	96.1		0.827	0.943	0.605	1.3	4.2

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1.3	43.377	79136	2101	97.707	0.125	0.1243	0.1399	0.1608	0.1704	23.929

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.257			-0.567		0.823

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	30.98
r_dihedral_angle_4_deg	18.179
r_dihedral_angle_3_deg	14.149
r_scangle_it	7.744
r_scangle_other	7.743
r_lrange_it	7.104
r_lrange_other	7.033
r_scbond_it	6.76
r_scbond_other	6.758
r_dihedral_angle_1_deg	6.606

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	30.98
r_dihedral_angle_4_deg	18.179
r_dihedral_angle_3_deg	14.149
r_scangle_it	7.744
r_scangle_other	7.743
r_lrange_it	7.104
r_lrange_other	7.033
r_scbond_it	6.76
r_scbond_other	6.758
r_dihedral_angle_1_deg	6.606
r_mcangle_it	5.46
r_mcangle_other	5.458
r_rigid_bond_restr	5.261
r_mcbond_it	4.725
r_mcbond_other	4.713
r_angle_refined_deg	1.832
r_angle_other_deg	1.471
r_symmetry_xyhbond_nbd_refined	0.284
r_symmetry_xyhbond_nbd_other	0.231
r_nbd_refined	0.223
r_xyhbond_nbd_refined	0.193
r_nbd_other	0.19
r_nbtor_refined	0.187
r_symmetry_nbd_other	0.184
r_symmetry_nbd_refined	0.152
r_chiral_restr	0.118
r_symmetry_nbtor_other	0.085
r_xyhbond_nbd_other	0.076
r_bond_refined_d	0.016
r_gen_planes_refined	0.013
r_bond_other_d	0.003
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2218
Nucleic Acid Atoms
Solvent Atoms	333
Heterogen Atoms	66

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.