☰ Navigation Tabs
Crystal Structure of the Complex between the C-Terminal Domains of Human XPF and ERCC1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 295 Sodium Citrate, Ammonium Sulfate, Sodium Chloride, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 4.2 70
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.848 α = 90 b = 69.848 β = 90 c = 104.109 γ = 120
Symmetry Space Group P 32 1 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 116 CCD ADSC QUANTUM 315 2004-11-20 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 1.00696, 1.00930 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 50 99.9 8450 8442 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.7 2.8 99.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.7 34.71 2 7820 7812 372 99.95 0.25 0.24073 0.23906 0.232 0.27483 0.261 RANDOM 54.887
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.74 0.87 1.74 -2.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 9.365 r_scangle_it 5.379 r_scbond_it 3.115 r_angle_refined_deg 2.123 r_mcangle_it 1.971 r_mcbond_it 0.955 r_symmetry_vdw_refined 0.292 r_nbd_refined 0.283 r_xyhbond_nbd_refined 0.174 r_chiral_restr 0.132
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 9.365 r_scangle_it 5.379 r_scbond_it 3.115 r_angle_refined_deg 2.123 r_mcangle_it 1.971 r_mcbond_it 0.955 r_symmetry_vdw_refined 0.292 r_nbd_refined 0.283 r_xyhbond_nbd_refined 0.174 r_chiral_restr 0.132 r_symmetry_hbond_refined 0.056 r_bond_refined_d 0.022 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1093 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SOLVE phasing