2A5E
SOLUTION NMR STRUCTURE OF TUMOR SUPPRESSOR P16INK4A, RESTRAINED MINIMIZED MEAN STRUCTURE
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | NMR EXPERIMENTS FOR THE ASSIGNMENTS AND STRUCTURE CALCULATIONS : HNCACB | H2O AND D2O | CA. 0 | 7.5 | NO | 293 | ||
2 | HNCA | H2O AND D2O | CA. 0 | 7.5 | NO | 293 | ||
3 | CBCA(CO)HN | H2O AND D2O | CA. 0 | 7.5 | NO | 293 | ||
4 | HN(CO)CA | H2O AND D2O | CA. 0 | 7.5 | NO | 293 | ||
5 | HCCH-TOCSY | H2O AND D2O | CA. 0 | 7.5 | NO | 293 | ||
6 | HNHA | H2O AND D2O | CA. 0 | 7.5 | NO | 293 | ||
7 | 3D 15N-EDITED NOESY AND TOCSY | H2O AND D2O | CA. 0 | 7.5 | NO | 293 | ||
8 | 2D NOESY AND TOCSY | H2O AND D2O | CA. 0 | 7.5 | NO | 293 | ||
9 | 3D 13C-EDITED NOESY | H2O AND D2O | CA. 0 | 7.5 | NO | 293 | ||
10 | 3D 15N/13C SIMULTANEOUSLY EDITED NOESY | H2O AND D2O | CA. 0 | 7.5 | NO | 293 | ||
11 | 4D 15N/13C-EDITED NOESY | H2O AND D2O | CA. 0 | 7.5 | NO | 293 | ||
12 | 4D 13C/13C-EDITED NOESY. | H2O AND D2O | CA. 0 | 7.5 | NO | 293 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DMX600 | 600 |
2 | Bruker | DRX800 | 800 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | X-PLOR |
NMR Ensemble Information | |
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Conformer Selection Criteria | CLOSEST TO MEAN STRUCTURE WHICH SHOWS GOOD AGREEMENT WITH THE CONSTRAINTS. NONE OF THE CONSTRAINTS SHOW NOE VIOLATION BIGGER THAN 0.5 A AND DIHEDRAL ANGLE VIOLATION BIGGER THAN 5 DEGREE. |
Conformers Calculated Total Number | 90 |
Conformers Submitted Total Number | 1 |
Additional NMR Experimental Information | |
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Details | THE SOLUTION STRUCTURE OF THE TUMOR SUPPRESSOR P16INK4A HAS BEEN DETERMINED BY MULTI-DIMENSIONAL HERERONUCLEAR NMR. THE STRUCTURES WERE CALCULATED USING THE SIMULATED ANNEALING PROTOCOL OF NILGES ET AL. (1988) FEBS LETT. 229, 129-136 USING THE PROGRAM X-PLOR 3.1 (BRUNGER). THE CALCULATION IS BASED ON 1437 EXPERIMENTAL NMR RESTRAINTS (1370 DISTANCE AND 67 TORSION ANGLE RESTRAINTS). |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure solution | X-PLOR | ||
2 | refinement | X-PLOR |