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Crystal structure of Emp47p carbohydrate recognition domain (CRD), tetragonal crystal form
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.1 277 Sodium dihydrogen phosphate, Dipotassium hydrogen phosphate, Lithium sulfate, CAPS, pH 6.1, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.2 43.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.31 α = 90 b = 70.31 β = 90 c = 100.14 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2003-10-19 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD MAR CCD 165 mm 2003-09-26 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.0000 Photon Factory AR-NW12A 2 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 0.9734, 0.9798, 0.9800 SPring-8 BL41XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.42 50 99.6 0.058 14 13.6 48179 48001 15.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.42 1.47 99.9 0.374 3.6 13.9 4735
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.42 10 45346 45346 2392 94.7 0.134 0.134 0.1408 0.192 0.1363 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 6 2141.5
RMS Deviations Key Refinement Restraint Deviation s_approx_iso_adps 0.097 s_non_zero_chiral_vol 0.076 s_zero_chiral_vol 0.067 s_similar_adp_cmpnt 0.061 s_from_restr_planes 0.0318 s_angle_d 0.03 s_anti_bump_dis_restr 0.016 s_bond_d 0.012 s_rigid_bond_adp_cmpnt 0.004 s_similar_dist
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1844 Nucleic Acid Atoms Solvent Atoms 301 Heterogen Atoms 10
Software Software Software Name Purpose SHELX model building SHELXL-97 refinement HKL-2000 data reduction SCALEPACK data scaling SOLVE phasing