2A7U
NMR solution structure of the E.coli F-ATPase delta subunit N-terminal domain in complex with alpha subunit N-terminal 22 residues
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated_NOESY | 0.6 mM delta subunit N-terminal domain U-13C,15N; 0.9 mM alpha subunit N-terminal peptide; 10 mM Na,K phosphate, pH 7.2, 3mM NaN3, 0.1 mM EDTA; 93% H20, 7% D20 | 93% H20, 7% D20 | 50 mM | 7.2 | ambient | 295 | |
2 | 13C/12C filtered 2-D NOESY | 0.6 mM delta subunit N-terminal domain U-13C,15N; 0.9 mM alpha subunit N-terminal peptide; 10 mM Na,K phosphate, pH 7.2, 3mM NaN3, 0.1 mM EDTA; 93% H20, 7% D20 | 93% H20, 7% D20 | 50 mM | 7.2 | ambient | 295 | |
3 | 12C/12C filtered 2-D NOESY | 0.6 mM delta subunit N-terminal domain U-13C,15N; 0.9 mM alpha subunit N-terminal peptide; 10 mM Na,K phosphate, pH 7.2, 3mM NaN3, 0.1 mM EDTA; 93% H20, 7% D20 | 93% H20, 7% D20 | 50 mM | 7.2 | ambient | 295 | |
4 | 14N/12C filtered 2-D NOESY | 0.6 mM delta subunit N-terminal domain U-13C,15N; 0.9 mM alpha subunit N-terminal peptide; 10 mM Na,K phosphate, pH 7.2, 3mM NaN3, 0.1 mM EDTA; 93% H20, 7% D20 | 93% H20, 7% D20 | 50 mM | 7.2 | ambient | 295 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 500 |
2 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
distance geometry; simulated annealing; molecular dynamics | rms difference of non-H atoms 1.114, for the backbone atoms 0.6174 | X-PLOR |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | averaged minimized structure |
Conformers Calculated Total Number | 10 |
Conformers Submitted Total Number | 1 |
Representative Model | (minimized average structure) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | X-PLOR | 3.8 | AT Brunger |
2 | data analysis | Felix | 98 | Accelrys |
3 | refinement | X-PLOR | 3.8 | AT Brunger |