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Crystal structure of the Norwalk virus RNA dependent RNA polymerase from strain Hu/NLV/Dresden174/1997/GE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 298 Sodium Citrate, Sodium Cacodylate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.6 53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.47 α = 90 b = 125.56 β = 90 c = 218.13 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-07-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.94995 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 30 97.1 0.085 12.7 5 107725 107725
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.4 95.7 0.374 3.11 3.3 12568
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 20 102225 102225 5372 97.18 0.19554 0.19554 0.19232 0.25654 0.2028 RANDOM 31.932
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.19 0.44 -1.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.713 r_dihedral_angle_4_deg 20.262 r_dihedral_angle_3_deg 18.227 r_dihedral_angle_1_deg 6.531 r_scangle_it 2.624 r_scbond_it 1.616 r_angle_refined_deg 1.433 r_mcangle_it 1.106 r_mcbond_it 0.676 r_nbtor_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.713 r_dihedral_angle_4_deg 20.262 r_dihedral_angle_3_deg 18.227 r_dihedral_angle_1_deg 6.531 r_scangle_it 2.624 r_scbond_it 1.616 r_angle_refined_deg 1.433 r_mcangle_it 1.106 r_mcbond_it 0.676 r_nbtor_refined 0.305 r_nbd_refined 0.218 r_symmetry_vdw_refined 0.176 r_xyhbond_nbd_refined 0.173 r_symmetry_hbond_refined 0.158 r_chiral_restr 0.102 r_bond_refined_d 0.012 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15716 Nucleic Acid Atoms Solvent Atoms 1122 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing