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Crystal structure of apocarotenoid cleavage oxygenase from Synechocystis, Fe-free apoenzyme
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.7 pH 5.70
Crystal Properties Matthews coefficient Solvent content 3.6 65.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 122.928 α = 90 b = 122.928 β = 90 c = 205.56 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.68 45.8 98.6 0.06 24.5 8.7 44859 55.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.68 2.85 92.6 0.31 7.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIRAS THROUGHOUT 2.68 47.14 44422 44422 2248 0.211 0.21 0.21 0.2087 0.243 0.204 0.211
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation t_dihedral_angle_d 20.237 t_it 1.499 t_angle_deg 1.173 t_nbd 0.049 t_gen_planes 0.019 t_trig_c_planes 0.011 t_bond_d 0.007 t_incorr_chiral_ct t_pseud_angle t_omega_torsion
RMS Deviations Key Refinement Restraint Deviation t_dihedral_angle_d 20.237 t_it 1.499 t_angle_deg 1.173 t_nbd 0.049 t_gen_planes 0.019 t_trig_c_planes 0.011 t_bond_d 0.007 t_incorr_chiral_ct t_pseud_angle t_omega_torsion t_other_torsion t_improper_torsion t_chiral_improper_torsion t_sum_occupancies t_utility_distance t_utility_angle t_utility_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7534 Nucleic Acid Atoms Solvent Atoms 114 Heterogen Atoms 54
Software Software Software Name Purpose TNT refinement XDS data reduction XSCALE data scaling SHARP phasing