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LECTIN FROM RALSTONIA SOLANACEARUM COMPLEXED WITH XYLOGLUCAN FRAGMENT
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other COMPLEX WITH SELENIO SUGAR (WATER, LIGAND REMOVED
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP RSL/FUCOSE CRYSTALS WERE PREPARED BY HANGING DROPS METHODS USING 1.5M NH42(S04) AND SOAKED IN 2.7 MG/ML XXFG SOLUTION
Crystal Properties Matthews coefficient Solvent content 2.3 45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.127 α = 90 b = 64.127 β = 90 c = 128.121 γ = 90
Symmetry Space Group P 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD TOROIDAL MIRROR 2005-01-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 64.15 99.7 0.11 14.9 8.35 24221 14.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.85 96.7 0.47 3.1 6.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT COMPLEX WITH SELENIO SUGAR (WATER, LIGAND REMOVED 1.8 64.15 25520 1299 99.7 0.148 0.146 0.1588 0.188 0.1976 RANDOM 11.34
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.019 -0.019 0.038
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.478 r_dihedral_angle_3_deg 10.845 r_dihedral_angle_1_deg 7.032 r_dihedral_angle_4_deg 5.099 r_scangle_it 3.076 r_scbond_it 2.27 r_angle_refined_deg 1.833 r_mcangle_it 1.66 r_mcbond_it 1.336 r_angle_other_deg 0.797
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.478 r_dihedral_angle_3_deg 10.845 r_dihedral_angle_1_deg 7.032 r_dihedral_angle_4_deg 5.099 r_scangle_it 3.076 r_scbond_it 2.27 r_angle_refined_deg 1.833 r_mcangle_it 1.66 r_mcbond_it 1.336 r_angle_other_deg 0.797 r_nbd_other 0.209 r_nbtor_refined 0.181 r_xyhbond_nbd_refined 0.181 r_nbd_refined 0.178 r_symmetry_vdw_other 0.163 r_symmetry_vdw_refined 0.15 r_chiral_restr 0.149 r_symmetry_hbond_refined 0.145 r_nbtor_other 0.089 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2024 Nucleic Acid Atoms Solvent Atoms 334 Heterogen Atoms 162
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing