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STRUCTURE OF CDK2 COMPLEXED WITH PNU-198873
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.4 10 PERCENT PEG4000,50 MM AMMONIUM ACETATE, 50 MM HEPES PH 7.4
Crystal Properties Matthews coefficient Solvent content 2.12 41.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.215 α = 90 b = 71.615 β = 90 c = 71.588 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 1998-11-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 5.2R ELETTRA 5.2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 20 97.4 0.05 12.2 3.5 23407
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 2 98.4 0.21 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 1.85 20 22169 1200 97.5 0.226 0.223 0.2291 0.272 0.2742 RANDOM 27.71
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 -1.53 1.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.338 r_scangle_it 4.109 r_scbond_it 2.593 r_mcangle_it 1.947 r_angle_refined_deg 1.521 r_mcbond_it 1.104 r_angle_other_deg 0.911 r_symmetry_vdw_other 0.271 r_nbd_other 0.242 r_nbd_refined 0.221
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.338 r_scangle_it 4.109 r_scbond_it 2.593 r_mcangle_it 1.947 r_angle_refined_deg 1.521 r_mcbond_it 1.104 r_angle_other_deg 0.911 r_symmetry_vdw_other 0.271 r_nbd_other 0.242 r_nbd_refined 0.221 r_symmetry_hbond_refined 0.159 r_chiral_restr 0.143 r_symmetry_vdw_refined 0.131 r_xyhbond_nbd_refined 0.125 r_nbtor_other 0.087 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_gen_planes_other 0.004 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2215 Nucleic Acid Atoms Solvent Atoms 67 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling