☰ Navigation Tabs
D83R mutant of Asaris suum major sperm protein (MSP)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GRW PDB ENTRY 1GRW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 PROTEIN 5 MG/ML; 15% PEG4000; 0.1M AMMONIUM ACETATE (PH 5.9); 2% AMMONIUM SULPHATE; 10 MM DTT
Crystal Properties Matthews coefficient Solvent content 2.97 58.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.805 α = 90 b = 54.805 β = 90 c = 453.14 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 ADSC 2003-09-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.1 SRS PX14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 20 93.3 0.07 19.9 7.7 17093
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.56 78.5 0.34 4.7 6.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1GRW 2.5 20 22317 1221 92.9 0.23 0.226 0.291 RANDOM 56.07
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.16 1.16 -2.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.197 r_dihedral_angle_3_deg 18.648 r_dihedral_angle_4_deg 17.314 r_scangle_it 9.039 r_dihedral_angle_1_deg 7.264 r_scbond_it 6.464 r_mcangle_it 5.408 r_mcbond_it 3.531 r_angle_refined_deg 1.505 r_angle_other_deg 0.702
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.197 r_dihedral_angle_3_deg 18.648 r_dihedral_angle_4_deg 17.314 r_scangle_it 9.039 r_dihedral_angle_1_deg 7.264 r_scbond_it 6.464 r_mcangle_it 5.408 r_mcbond_it 3.531 r_angle_refined_deg 1.505 r_angle_other_deg 0.702 r_mcbond_other 0.569 r_symmetry_hbond_refined 0.369 r_symmetry_vdw_refined 0.327 r_symmetry_vdw_other 0.292 r_xyhbond_nbd_refined 0.241 r_nbd_refined 0.234 r_nbd_other 0.227 r_nbtor_refined 0.193 r_xyhbond_nbd_other 0.102 r_nbtor_other 0.098 r_chiral_restr 0.088 r_bond_refined_d 0.012 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3829 Nucleic Acid Atoms Solvent Atoms 152 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling