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X-ray structure of beta-mannanase from blue mussel Mytilus edulis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 0.1 M MES PH6.5, 0.2 M AMMONIUM SULPHATE, 25%(W/V) MME PEG 5000, 3% DIOXANE, pH 6.50
Crystal Properties Matthews coefficient Solvent content 2.3 44.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.073 α = 90 b = 65.164 β = 90 c = 93.086 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH SAGITALLY FOCUSING GE(220) AND A MULTILAYER 2001-10-01 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 52.7 98.5 0.17 11.6 5.4 48523 6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.69 98.1 0.31 4.9 4.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.6 19.73 45297 2426 94.4 0.191 0.19 0.1975 0.21 0.2182 RANDOM 15.84
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.548 r_dihedral_angle_4_deg 14.073 r_dihedral_angle_3_deg 11.44 r_dihedral_angle_1_deg 5.472 r_scangle_it 3.067 r_scbond_it 2.162 r_angle_refined_deg 1.3 r_mcangle_it 1.214 r_mcbond_it 1.036 r_angle_other_deg 0.846
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.548 r_dihedral_angle_4_deg 14.073 r_dihedral_angle_3_deg 11.44 r_dihedral_angle_1_deg 5.472 r_scangle_it 3.067 r_scbond_it 2.162 r_angle_refined_deg 1.3 r_mcangle_it 1.214 r_mcbond_it 1.036 r_angle_other_deg 0.846 r_symmetry_vdw_refined 0.262 r_nbd_refined 0.198 r_symmetry_vdw_other 0.183 r_nbtor_refined 0.178 r_nbd_other 0.175 r_symmetry_hbond_refined 0.126 r_xyhbond_nbd_refined 0.112 r_chiral_restr 0.081 r_nbtor_other 0.08 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2792 Nucleic Acid Atoms Solvent Atoms 203 Heterogen Atoms 5
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SHELXD phasing SHELXE phasing REFMAC refinement