2CZP
Structural analysis of membrane-bound mastoparan-X by solid-state NMR
SOLID-STATE NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_N-CA-CO | 2mg or 5mg uniformly 13C, 15N labeled MP-X bound to membrane: Molar ratio MP-X:membrane=1:20 | membrane DPPC:DPPG=4:1 relative humidity 32% | 7.4 | ambient | 253 | ||
2 | 3D_Ni-COi+1-CAi+1 | 2mg or 5mg uniformly 13C, 15N labeled MP-X bound to membrane: Molar ratio MP-X:membrane=1:20 | membrane DPPC:DPPG=4:1 relative humidity 32% | 7.4 | ambient | 253 | ||
3 | 2D_RFDR | 2mg or 5mg uniformly 13C, 15N labeled MP-X bound to membrane: Molar ratio MP-X:membrane=1:20 | membrane DPPC:DPPG=4:1 relative humidity 32% | 7.4 | ambient | 253 | ||
4 | 2D_SPCz5 | 2mg or 5mg uniformly 13C, 15N labeled MP-X bound to membrane: Molar ratio MP-X:membrane=1:20 | membrane DPPC:DPPG=4:1 relative humidity 32% | 7.4 | ambient | 253 | ||
5 | 2D_(CACB)i+1-(COCA)i | 2mg or 5mg uniformly 13C, 15N labeled MP-X bound to membrane: Molar ratio MP-X:membrane=1:20 | membrane DPPC:DPPG=4:1 relative humidity 32% | 7.4 | ambient | 283 | ||
6 | 2D_Ni-(COCA)i+1 | 2mg or 5mg uniformly 13C, 15N labeled MP-X bound to membrane: Molar ratio MP-X:membrane=1:20 | membrane DPPC:DPPG=4:1 relative humidity 32% | 7.4 | ambient | 283 | ||
7 | 2D_N-CA | 2mg or 5mg uniformly 13C, 15N labeled MP-X bound to membrane: Molar ratio MP-X:membrane=1:20 | membrane DPPC:DPPG=4:1 relative humidity 32% | 7.4 | ambient | 283 | ||
8 | 2D_Ni-(COCACB)i+1 | 2mg or 5mg uniformly 13C, 15N labeled MP-X bound to membrane: Molar ratio MP-X:membrane=1:20 | membrane DPPC:DPPG=4:1 relative humidity 32% | 7.4 | ambient | 253 | ||
9 | RR | 2mg selectively 13C labeled MP-X bound to membrane: Molar ratio MP-X:membrane=1:20 | membrane DPPC:DPPG=4:1 relative humidity 32% | 7.4 | ambient | 283 | ||
10 | REDOR | 2mg selectively 13C, 15N labeled MP-X bound to membrane: Molar ratio MP-X:membrane=1:20 | membrane DPPC:DPPG=4:1 relative humidity 32% | 7.4 | ambient | 253 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | CMX | 500 |
2 | Varian | CMX | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | the structures are based on a total of 31 restraints, 5 distance restraints derived by RR and REDOR experiments and 26 dihedral angle restraints predicted by TALOS. | Felix |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (closest to the average) |
Additional NMR Experimental Information | |
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Details | The structure was determined using triple-resonance 1H/13C/15N and double-resonance 1H/13C probes with 4mm and 3.2mm spinner modules. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | processing | Felix | 2000 | Accelrys Inc. |
2 | structure solution | CYANA | 1.0.6 | Guentert |
3 | data analysis | TALOS | 2003.027.13.05 | Delaglio |
4 | refinement | CYANA | 1.0.6 | Guentert |