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Crystal structure of T-state human hemoglobin complexed with three L35 molecules
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH 5.8 293 18% PEG 6000, 100mM Na-Cacodylate, 0.1mM L35, pH 5.8, BATCH, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.31 46.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.028 α = 90 b = 82.697 β = 90 c = 110.343 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 1.000 SPring-8 BL41XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 20 88.8 0.038 15.8 2.88 91355
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.45 1.5 54.9 0.181
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.45 19.65 86684 4573 100 0.18732 0.18585 0.1862 0.21516 0.2144 RANDOM 19.331
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.28 -0.5 0.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.674 r_dihedral_angle_3_deg 12.658 r_dihedral_angle_4_deg 10.983 r_dihedral_angle_1_deg 4.692 r_scangle_it 2.701 r_scbond_it 1.727 r_angle_refined_deg 1.363 r_mcangle_it 1.079 r_mcbond_it 0.693 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.674 r_dihedral_angle_3_deg 12.658 r_dihedral_angle_4_deg 10.983 r_dihedral_angle_1_deg 4.692 r_scangle_it 2.701 r_scbond_it 1.727 r_angle_refined_deg 1.363 r_mcangle_it 1.079 r_mcbond_it 0.693 r_nbtor_refined 0.303 r_symmetry_vdw_refined 0.209 r_nbd_refined 0.198 r_symmetry_hbond_refined 0.18 r_xyhbond_nbd_refined 0.121 r_chiral_restr 0.079 r_bond_refined_d 0.009 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4370 Nucleic Acid Atoms Solvent Atoms 614 Heterogen Atoms 247
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing