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Crystal structure of rotor ring with DCCD of the V- ATPase from Enterococcus hirae
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 296 32% PEG 400, 240mM Sodium citrate, 100mM Tris-HCl (pH 7.5), 4% Glycerol, VAPOR DIFFUSION, SITTING DROP, temperature 296K
Crystal Properties Matthews coefficient Solvent content 4.9 74.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 120.214 α = 90 b = 125.229 β = 90 c = 211.577 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU 2005-06-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL26B1 1.0000 SPring-8 BL26B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 107.83 0.091 11.2 4.7 125160 124723 57.321
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.462 0.605 1.8 3.7 8579
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.4 107.83 1.8 124797 118450 6272 99.65 0.22529 0.22499 0.2272 0.23094 0.232 RANDOM 57.321
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.32 2.75 0.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.302 r_dihedral_angle_3_deg 13.521 r_dihedral_angle_1_deg 4.705 r_scangle_it 1.624 r_angle_refined_deg 1.199 r_scbond_it 0.943 r_mcangle_it 0.742 r_mcbond_it 0.403 r_nbtor_refined 0.3 r_nbd_refined 0.194
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.302 r_dihedral_angle_3_deg 13.521 r_dihedral_angle_1_deg 4.705 r_scangle_it 1.624 r_angle_refined_deg 1.199 r_scbond_it 0.943 r_mcangle_it 0.742 r_mcbond_it 0.403 r_nbtor_refined 0.3 r_nbd_refined 0.194 r_symmetry_vdw_refined 0.182 r_symmetry_hbond_refined 0.173 r_xyhbond_nbd_refined 0.127 r_chiral_restr 0.089 r_metal_ion_refined 0.019 r_bond_refined_d 0.009 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11270 Nucleic Acid Atoms Solvent Atoms 245 Heterogen Atoms 1134
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling AMoRE phasing