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Apo tyrosine phenol-lyase from Citrobacter freundii at pH 8.0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 50 mM potassium phosphate, 2 mM DDT, 0.2 M KCl, 32.5% (w/v) monomethyl ether PEG 2000, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.8 60.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 133.644 α = 90 b = 143.735 β = 90 c = 59.915 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 CCD MARRESEARCH 2002-05-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 1.00 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 17 95.5 0.055 95091 95091
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.88 85.1 85.1 0.381
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.85 16.74 93357 93357 939 100 0.175 0.175 0.174 0.206 0.2506 RANDOM 25.602
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.54 -0.1 -0.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.879 r_dihedral_angle_3_deg 14.997 r_dihedral_angle_4_deg 13.779 r_dihedral_angle_1_deg 6.269 r_scangle_it 5.907 r_scbond_it 4.092 r_mcangle_it 2.147 r_angle_refined_deg 1.414 r_mcbond_it 1.342 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.879 r_dihedral_angle_3_deg 14.997 r_dihedral_angle_4_deg 13.779 r_dihedral_angle_1_deg 6.269 r_scangle_it 5.907 r_scbond_it 4.092 r_mcangle_it 2.147 r_angle_refined_deg 1.414 r_mcbond_it 1.342 r_nbtor_refined 0.307 r_nbd_refined 0.231 r_symmetry_vdw_refined 0.198 r_xyhbond_nbd_refined 0.173 r_symmetry_hbond_refined 0.157 r_metal_ion_refined 0.114 r_chiral_restr 0.107 r_bond_refined_d 0.015 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7224 Nucleic Acid Atoms Solvent Atoms 1021 Heterogen Atoms 12
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling AMoRE phasing REFMAC refinement