2FBN
Plasmodium falciparum putative FK506-binding protein PFL2275c, C-terminal TPR-containing domain
X-RAY DIFFRACTION
Crystallization
Crystalization Experiments | ||||
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ID | Method | pH | Temperature | Details |
1 | VAPOR DIFFUSION | 4.6 | 296 | 3.5 M NaFormate, 0.1 M NaAcetate pH 4.6, VAPOR DIFFUSION, temperature 296K |
Crystal Properties | |
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Matthews coefficient | Solvent content |
1.98 | 38.01 |
Crystal Data
Unit Cell | |
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Length ( Å ) | Angle ( ˚ ) |
a = 56.239 | α = 90 |
b = 62.936 | β = 90 |
c = 103.334 | γ = 90 |
Symmetry | |
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Space Group | P 21 21 21 |
Diffraction
Diffraction Experiment | ||||||||||||||
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ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
1 | 1 | x-ray | 100 | IMAGE PLATE | RIGAKU RAXIS IV | VariMax HR | 2005-12-05 | M | SINGLE WAVELENGTH | |||||
2 | 1 | x-ray | 100 | IMAGE PLATE | RIGAKU RAXIS IV | VeriMax Cr | 2005-12-07 | M | SINGLE WAVELENGTH |
Radiation Source | |||||
---|---|---|---|---|---|
ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
1 | ROTATING ANODE | RIGAKU FR-E | |||
2 | ROTATING ANODE | RIGAKU RU200 | 2.29 |
Data Collection
Overall | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | R Sym I (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | |||||||
1,2 | 1.63 | 50 | 88 | 0.043 | 0.043 | 19.4 | 6 | 41003 | 41003 | 28.9 |
Highest Resolution Shell | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | Percent Possible (Observed) | R Merge I (Observed) | R-Sym I (Observed) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) | ||||||||||
1.63 | 1.66 | 31 | 0.507 | 0.507 | 1.64 | 2.9 | 720 |
Refinement
Statistics | |||||||||||||||||||
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Diffraction ID | Structure Solution Method | Cross Validation method | Resolution (High) | Resolution (Low) | Number Reflections (All) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (All) | R-Factor (Observed) | R-Work (Depositor) | R-Work (DCC) | R-Free (Depositor) | R-Free (DCC) | R-Free Selection Details | Mean Isotropic B | |||
X-RAY DIFFRACTION | SAD | THROUGHOUT | 1.63 | 50 | 41003 | 39882 | 1058 | 87.99 | 0.2008 | 0.2008 | 0.19985 | 0.2 | 0.23522 | 0.19 | RANDOM | 26.34 |
Temperature Factor Modeling | ||||||
---|---|---|---|---|---|---|
Anisotropic B[1][1] | Anisotropic B[2][2] | Anisotropic B[3][3] | ||||
0.67 | 0.24 | -0.91 |
RMS Deviations | |
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Key | Refinement Restraint Deviation |
r_dihedral_angle_2_deg | 37.61 |
r_dihedral_angle_4_deg | 16.331 |
r_dihedral_angle_3_deg | 13.819 |
r_dihedral_angle_1_deg | 4.504 |
r_scangle_it | 3.875 |
r_scbond_it | 2.496 |
r_mcangle_it | 1.438 |
r_angle_refined_deg | 1.114 |
r_mcbond_it | 0.861 |
r_nbtor_refined | 0.307 |
Non-Hydrogen Atoms Used in Refinement | |
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Non-Hydrogen Atoms | Number |
Protein Atoms | 2510 |
Nucleic Acid Atoms | |
Solvent Atoms | 354 |
Heterogen Atoms |
Software
Software | |
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Software Name | Purpose |
REFMAC | refinement |
CrystalClear | data reduction |
HKL-2000 | data scaling |
SOLVE | phasing |
RESOLVE | phasing |
ARP/wARP | model building |
Coot | model building |