Haddock model of the complex between double module of LRP, CR56, and first domain of receptor associated protein, RAP-d1.
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | Exchange 15N,1H-HSQC | 0.1mM [U-99% 15N]-CR56; 0.1mM RAPd1; H2O/D2O (90:10) | H2O/D2O (90:10) | 7.0 | ambient | 298 | ||
| 2 | Exchange 15N,1H,-HSQC | 0.5mM [U-99% 15N]-RAPd1; 0.5mM CR56; H2O/D2O (90:10) | H2O/D2O (90:10) | |||||
| 3 | 15N,1H-HSQC | 0.1mM [U-99% 15N]-CR56; 0.1mM RAPd1; H2O/D2O (90:10) | H2O/D2O (90:10) | 7.0 | ambient | 298 | ||
| 4 | 15N,1H-HSQC | 0.5mM [U-99% 15N]-RAPd1; 0.5mM CR56; H2O/D2O (90:10) | H2O/D2O (90:10) | |||||
| 5 | HNCA | 0.08 mM [U-99% 15N, U-99% 13C]-CR56; 0.08 mM [U-99% 15N, U-99% 13C]-RAPd1; H2O/D2O (90:10) | H2O/D2O (90:10) | |||||
| 6 | HNCACB, HN(CO)CACB | 0.08 mM [U-99% 15N, U-99% 13C]-CR56; 0.08 mM [U-99% 15N, U-99% 13C]-RAPd1; H2O/D2O (90:10) | H2O/D2O (90:10) | |||||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Varian | INOVA | 750 |
| 2 | Varian | INOVA | 800 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| HADDOCK modelling from chemical shift perturbation data on both complex partners | Pronto3D | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | Best averaged HADDOCK score |
| Conformers Calculated Total Number | 200 |
| Conformers Submitted Total Number | 1 |
| Representative Model | 5 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | data analysis | Pronto3D | 20020517 | Kjaer et al |
| 2 | structure solution | HADDOCK | Bonvin et al | |
| 3 | refinement | HADDOCK | Bonvin et al | |
