X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.529118% PEG8000, 50mM TRIS-HCL, 50mM NaAc, 1mM EDTA, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.3347.22

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 156.618α = 90
b = 35.257β = 112.17
c = 114.971γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2004-06-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONMAX II BEAMLINE I7111.092MAX III711

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.72099.40.059643896438911
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.71.7999.90.3781.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT1HL41.7206438964189324998.940.2040.2040.2030.23RANDOM31.885
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.5-0.732.16-1.22
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.789
r_dihedral_angle_3_deg10.404
r_dihedral_angle_4_deg10.324
r_dihedral_angle_1_deg5.687
r_scangle_it1.604
r_scbond_it1.201
r_angle_refined_deg1.031
r_mcangle_it0.677
r_angle_other_deg0.673
r_mcbond_it0.569
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.789
r_dihedral_angle_3_deg10.404
r_dihedral_angle_4_deg10.324
r_dihedral_angle_1_deg5.687
r_scangle_it1.604
r_scbond_it1.201
r_angle_refined_deg1.031
r_mcangle_it0.677
r_angle_other_deg0.673
r_mcbond_it0.569
r_symmetry_vdw_other0.182
r_nbd_refined0.181
r_metal_ion_refined0.174
r_nbd_other0.171
r_nbtor_refined0.156
r_xyhbond_nbd_refined0.113
r_symmetry_hbond_refined0.104
r_mcbond_other0.09
r_symmetry_vdw_refined0.08
r_nbtor_other0.079
r_chiral_restr0.062
r_bond_refined_d0.006
r_gen_planes_refined0.003
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4026
Nucleic Acid Atoms
Solvent Atoms537
Heterogen Atoms4

Software

Software
Software NamePurpose
SCALAdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
MOSFLMdata reduction
CCP4data scaling
CNSphasing