X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION5.52900.2M Magnesium Chloride Hexahydrate, 0.1M pH5.5 Bis-Tris, 25% w/v PEG 3350, VAPOR DIFFUSION, temperature 290K
Crystal Properties
Matthews coefficientSolvent content
2.0740.46

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 34.728α = 96.89
b = 55.51β = 93.08
c = 93.556γ = 102.05
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray1002004-12-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.97934APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.485086.80.0677.83.297803
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.481.5381.481.40.8741.43

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.65011630078129392987.530.1640.1640.1620.196RANDOM15.506
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.790.220.3-0.56-0.04-0.12
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.672
r_dihedral_angle_4_deg18.456
r_dihedral_angle_3_deg11.679
r_dihedral_angle_1_deg5.663
r_scangle_it3.046
r_scbond_it2.159
r_angle_refined_deg1.332
r_mcangle_it1.103
r_mcbond_it1.012
r_angle_other_deg0.791
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.672
r_dihedral_angle_4_deg18.456
r_dihedral_angle_3_deg11.679
r_dihedral_angle_1_deg5.663
r_scangle_it3.046
r_scbond_it2.159
r_angle_refined_deg1.332
r_mcangle_it1.103
r_mcbond_it1.012
r_angle_other_deg0.791
r_nbd_refined0.222
r_mcbond_other0.193
r_nbtor_refined0.184
r_symmetry_hbond_refined0.18
r_nbd_other0.172
r_symmetry_vdw_other0.139
r_xyhbond_nbd_refined0.13
r_nbtor_other0.083
r_symmetry_vdw_refined0.077
r_chiral_restr0.076
r_bond_refined_d0.011
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5803
Nucleic Acid Atoms
Solvent Atoms707
Heterogen Atoms68

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
MAR345data collection
AMoREphasing