Find PDB structures and Computed Structure Models (CSM) by combining queries from tools in this suite: Attribute Search, Sequence Similarity, Sequence Motif, 3D Similarity, and 3D Motif with 'AND' logic.
pH 6.5 MES, 100 mM NaCl, 20 mM CaCl2, 10 mM DTT, 0.02% NaN3, 5% D2O
100 mM NaCl, 20 mM CaCl2
6.5
ambient
298
2
3D_13C-separated_NOESY
0.5 mM XCC1710
pH 6.5 MES, 100 mM NaCl, 20 mM CaCl2, 10 mM DTT, 0.02% NaN3, 5% D2O
100 mM NaCl, 20 mM CaCl2
6.5
ambient
298
3
3D_13C-separated_NOESY
0.5 mM XCC1710
pH 6.5 MES, 100 mM NaCl, 20 mM CaCl2, 10 mM DTT, 0.02% NaN3, 100% D2O
100 mM NaCl, 20 mM CaCl2
6.5
ambient
298
4
4D_13C-separated_NOESY
0.5 mM XCC1710
pH 6.5 MES, 100 mM NaCl, 20 mM CaCl2, 10 mM DTT, 0.02% NaN3, 100% D2O
100 mM NaCl, 20 mM CaCl2
6.5
ambient
298
5
HNHA
0.5 mM XCC1710
pH 6.5 MES, 100 mM NaCl, 20 mM CaCl2, 10 mM DTT, 0.02% NaN3, 5% D2O
100 mM NaCl, 20 mM CaCl2
6.5
ambient
298
NMR Spectrometer Information
Spectrometer
Manufacturer
Model
Field Strength
1
Varian
UNITYPLUS
500
2
Varian
INOVA
600
3
Varian
INOVA
750
NMR Refinement
Method
Details
Software
THE INITIAL STRUCTURE WAS DETERMINED USING AUTOMATED STRUCTURE DETERMINATION (AUTOSTRUCTURE) AND REFINED MANUALLY. A FINAL REFINEMENT USED SIMULTATED ANNEALING IN EXPLICIT SOLVENT.
THE STRUCTURES ARE BASED ON A TOTAL OF 935 RESTRAINTS.
SUMMARY OF EXPERIMENTAL CONSTRAINTS
RESTRAINING DISTANCE RESTRAINTS: TOTAL = 758;
INTRA-RESIDUE [I=J] = 174;
SEQUENTIAL [(I-J)=1] = 174;
MEDIUM RANGE [1<(I-J)<5] = 109;
LONG RANGE [(I-J)>=5] = 301;
HYDROGEN BOND RESTRAINTS = 56 (2 PER H-BOND);
NUMBER OF RESTRAINING DISTANCE RESTRAINTS PER RESTRAINED RESIDUE = 7.3;
DIHEDRAL-ANGLE RESTRAINTS = 121 (60 PHI, 59 PSI, 2 CHI-1);
TOTAL NUMBER OF RESTRAINTS PER RESTRAINED RESIDUE = 8.3;
NUMBER OF LONG RANGE NOE DISTANCE RESTRAINTS PER RESTRAINED RESIDUE = 2.7;
NUMBER OF STRUCTURES COMPUTED = 40;
NUMBER OF STRUCTURES USED = 20;
AVERAGE DISTANCE VIOLATIONS >0.0001 ANG = 19.8 +/- 3.5;
AVERAGE R.M.S. DISTANCE VIOLATION = 0.0009 +/- 0.0003 ANG;
MAXIMUM NUMBER OF DISTANCE VIOLATIONS 25;
MAXIMUM DISTANCE VIOLATION = 0.03 ANG;
AVERAGE DIHEDRAL ANGLE VIOLATIONS: >0.0001 DEG = 2.5+/-1.3;
MAX NUMBER OF DIHEDRAL ANGLE VIOLATIONS = 4;
AVERAGE R.M.S. DIHEDRAL ANGLE VIOLATION = 0.02 +/- .01 DEG.;
RMSD VALUES TO AVERAGE STRUCTURE:
BACKBONE ATOMS (N,C,C' RESIDUES 12-125) = 0.88 ANG,
ALL HEAVY ATOMS = 1.38 ANG;
BACKBONE ATOMS (N,C,C' RESIDUES 32-122) = 0.71 ANG,
ALL HEAVY ATOMS = 1.21 ANG;
BACKBONE ATOMS (N,C,C' RESIDUES 16-17,21-36,39-41,44-46,53-73,76-122) = 0.70 ANG,
ALL HEAVY ATOMS = 1.14 ANG;
PROCHECK (RESIDUES 16-17,21-36,39-41,44-46,53-73,76-122):
MOST FAVORED REGIONS = 84.6%;
ADDITIONAL ALLOWED REGIONS = 14.0%;
GENEROUSLY ALLOWED REGIONS = 0.2%;
DISALLOWED REGIONS = 1.2%;
PROCHECK (RESIDUES 12-125):
MOST FAVORED REGIONS = 77.8%;
ADDITIONAL ALLOWED REGIONS = 19.2%;
GENEROUSLY ALLOWED REGIONS = 2.0%;
DISALLOWED REGIONS = 1.0%.
VNMR
NMR Ensemble Information
Conformer Selection Criteria
structures with fewest restraint violations, low restraint violation energies, and acceptable geometry