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Estrogen Related Receptor-gamma ligand binding domain complexed with 4-hydroxy-tamoxifen
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2GP7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 283 36% Peg600, 0.1M tris, 0.1% zwittergent 3-16, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 283K
Crystal Properties Matthews coefficient Solvent content 2.71 54.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.01 α = 90 b = 64.01 β = 90 c = 138.23 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.0 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 99 0.07 12.9 32660 32333 -3 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.76 99.7 0.351 8.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2GP7 1.7 46.98 32473 32165 1025 99.05 0.18 0.18 0.18 0.1937 0.195 0.2143 RANDOM 21.881
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.13 -0.13 0.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.423 r_dihedral_angle_4_deg 18.398 r_dihedral_angle_3_deg 12.246 r_dihedral_angle_1_deg 4.516 r_scangle_it 2.794 r_scbond_it 2.03 r_angle_refined_deg 1.349 r_mcangle_it 1.175 r_mcbond_it 1.044 r_angle_other_deg 0.812
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.423 r_dihedral_angle_4_deg 18.398 r_dihedral_angle_3_deg 12.246 r_dihedral_angle_1_deg 4.516 r_scangle_it 2.794 r_scbond_it 2.03 r_angle_refined_deg 1.349 r_mcangle_it 1.175 r_mcbond_it 1.044 r_angle_other_deg 0.812 r_nbd_refined 0.244 r_symmetry_vdw_refined 0.233 r_symmetry_hbond_refined 0.228 r_symmetry_vdw_other 0.198 r_mcbond_other 0.185 r_nbtor_refined 0.179 r_nbd_other 0.168 r_xyhbond_nbd_refined 0.135 r_nbtor_other 0.085 r_chiral_restr 0.067 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_gen_planes_other 0.003 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1951 Nucleic Acid Atoms Solvent Atoms 330 Heterogen Atoms 29
Software Software Software Name Purpose SCALEPACK data scaling AMoRE phasing REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection