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Crystal Structure of Murine NMPRTase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9.2 295 21% PEG3350
200mM NaCl
Bacl2 as additive, pH 9.2, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.42 49.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.263 α = 90 b = 107.736 β = 96.57 c = 83.287 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2005-06-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X4A 0.97926 NSLS X4A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 82.76 94.79 55602 55602 0.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 94.79
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.1 82.76 55602 2979 94.79 0.22752 0.22527 0.2269 0.26993 0.2332 RANDOM 21.314
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.64 -0.62 -1.27 -0.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.229 r_dihedral_angle_4_deg 19.56 r_dihedral_angle_3_deg 14.942 r_dihedral_angle_1_deg 5.743 r_scangle_it 2.089 r_scbond_it 1.358 r_angle_refined_deg 1.172 r_mcangle_it 0.861 r_mcbond_it 0.499 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.229 r_dihedral_angle_4_deg 19.56 r_dihedral_angle_3_deg 14.942 r_dihedral_angle_1_deg 5.743 r_scangle_it 2.089 r_scbond_it 1.358 r_angle_refined_deg 1.172 r_mcangle_it 0.861 r_mcbond_it 0.499 r_nbtor_refined 0.302 r_nbd_refined 0.2 r_symmetry_vdw_refined 0.166 r_xyhbond_nbd_refined 0.163 r_symmetry_hbond_refined 0.131 r_chiral_restr 0.078 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7420 Nucleic Acid Atoms Solvent Atoms 713 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement ADSC data collection DENZO data reduction SCALEPACK data scaling COMO phasing