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The X-ray crystal structure of murine OX40L
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 292 0.1 M NaAcetate, 2M Ammonium Sulfate, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 2.27 45.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.149 α = 90 b = 74.149 β = 90 c = 48.815 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2003-09-09 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD M MAD 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CHESS BEAMLINE A1 0.976 CHESS A1 2 SYNCHROTRON ALS BEAMLINE 5.0.2 0.9199, 0.9050, 0.9202 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.45 30 100 0.068 11.9 14.3 27220 27220 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.45 1.5 100 0.466 3.2 14 2706
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.45 30 -3 26568 23933 2635 97.62 0.16765 0.16765 0.16505 0.2124 0.1922 0.2328 RANDOM 17.786
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.2 -0.1 -0.2 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.155 r_dihedral_angle_4_deg 16.943 r_dihedral_angle_3_deg 12.473 r_dihedral_angle_1_deg 7.387 r_sphericity_free 7.292 r_scangle_it 3.953 r_mcangle_it 3.295 r_scbond_it 3.115 r_mcbond_it 2.794 r_sphericity_bonded 2.679
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.155 r_dihedral_angle_4_deg 16.943 r_dihedral_angle_3_deg 12.473 r_dihedral_angle_1_deg 7.387 r_sphericity_free 7.292 r_scangle_it 3.953 r_mcangle_it 3.295 r_scbond_it 3.115 r_mcbond_it 2.794 r_sphericity_bonded 2.679 r_rigid_bond_restr 1.822 r_angle_refined_deg 1.275 r_mcbond_other 1.059 r_angle_other_deg 0.753 r_symmetry_vdw_other 0.256 r_symmetry_hbond_refined 0.207 r_symmetry_vdw_refined 0.203 r_nbd_refined 0.189 r_nbd_other 0.18 r_nbtor_refined 0.171 r_xyhbond_nbd_refined 0.171 r_chiral_restr 0.085 r_nbtor_other 0.079 r_xyhbond_nbd_other 0.038 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1022 Nucleic Acid Atoms Solvent Atoms 103 Heterogen Atoms 19
Software Software Software Name Purpose REFMAC refinement SHARP phasing