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Phosphomannomutase from Leishmania mexicana
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 294 14% (w/v) PEG3350, 10% PEG 400, 0.1M citrate, 50% PEG3550, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.53 51.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.413 α = 90 b = 92.413 β = 90 c = 173.249 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 2005-04-06 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-ID-B 0.979417, 0.979564, 0.984011 APS 14-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 30 99.8 50650 50609
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 100 0.518
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.1 29.8 50609 2572 99.79 0.191 0.189 0.1978 0.23 0.2348 RANDOM 45.548
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.37 -0.18 -0.37 0.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.201 r_dihedral_angle_3_deg 16.915 r_dihedral_angle_4_deg 15.847 r_dihedral_angle_1_deg 6.333 r_scangle_it 2.495 r_scbond_it 1.749 r_angle_refined_deg 1.46 r_mcangle_it 0.972 r_angle_other_deg 0.86 r_mcbond_it 0.801
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.201 r_dihedral_angle_3_deg 16.915 r_dihedral_angle_4_deg 15.847 r_dihedral_angle_1_deg 6.333 r_scangle_it 2.495 r_scbond_it 1.749 r_angle_refined_deg 1.46 r_mcangle_it 0.972 r_angle_other_deg 0.86 r_mcbond_it 0.801 r_symmetry_vdw_refined 0.316 r_symmetry_vdw_other 0.297 r_nbd_refined 0.206 r_nbd_other 0.186 r_nbtor_refined 0.182 r_xyhbond_nbd_refined 0.176 r_symmetry_hbond_refined 0.166 r_mcbond_other 0.164 r_chiral_restr 0.093 r_nbtor_other 0.087 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5838 Nucleic Acid Atoms Solvent Atoms 280 Heterogen Atoms 44
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling SHARP phasing