X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
18.516% PEG10K 0.16M MGCL2 0.08 M TRIS PH=8.5, pH 8.50
Crystal Properties
Matthews coefficientSolvent content
2.755

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 82.917α = 90
b = 91.41β = 90
c = 261.609γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2006-10-19MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SASLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.441990.0717.37.2278546
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.42.592.40.612.626.13

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2JFD2.440.9674428390299.60.2240.2220.271RANDOM26.16
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
4.120.83-4.95
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.377
r_dihedral_angle_4_deg19.305
r_dihedral_angle_3_deg17.845
r_scangle_it10.193
r_scbond_it8.68
r_dihedral_angle_1_deg6.293
r_mcangle_it4.384
r_mcbond_it2.967
r_angle_refined_deg1.415
r_angle_other_deg1.385
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.377
r_dihedral_angle_4_deg19.305
r_dihedral_angle_3_deg17.845
r_scangle_it10.193
r_scbond_it8.68
r_dihedral_angle_1_deg6.293
r_mcangle_it4.384
r_mcbond_it2.967
r_angle_refined_deg1.415
r_angle_other_deg1.385
r_symmetry_vdw_other0.239
r_nbd_refined0.226
r_nbd_other0.19
r_symmetry_hbond_refined0.185
r_nbtor_refined0.18
r_xyhbond_nbd_refined0.154
r_symmetry_vdw_refined0.131
r_nbtor_other0.096
r_chiral_restr0.071
r_bond_refined_d0.012
r_gen_planes_refined0.004
r_bond_other_d0.002
r_gen_planes_other0.002
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms12036
Nucleic Acid Atoms
Solvent Atoms38
Heterogen Atoms36

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing