☰ Navigation Tabs
Structure of human signal regulatory protein (sirp) beta(2)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2UV3 PDB ENTRY 2UV3 CHAIN A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 300 NL 25 MG/ML SIRP BETA PLUS 100 NL RESERVOIR (3.2 M AMMONIUM SULPHATE, 0.1 M MES PH 6.0) EQUILIBRATED AGAINST 95 UL OF RESERVOIR AT 20.5 C.
Crystal Properties Matthews coefficient Solvent content 1.94 36.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 114.979 α = 90 b = 47.49 β = 93.39 c = 40.044 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MIRRORS 2007-06-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 96.8 0.07 30 5.9 19509 -3 15.42
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 79.1 0.17 4.4 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2UV3 CHAIN A 1.8 57.35 18506 1002 96.8 0.174 0.172 0.1798 0.213 0.2172 RANDOM 10.99
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.86 0.02 -0.35 -0.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.946 r_dihedral_angle_4_deg 17.509 r_dihedral_angle_3_deg 11.165 r_dihedral_angle_1_deg 6.309 r_scangle_it 3.932 r_scbond_it 2.604 r_mcangle_it 1.652 r_mcbond_it 1.238 r_angle_refined_deg 1.2 r_angle_other_deg 0.752
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.946 r_dihedral_angle_4_deg 17.509 r_dihedral_angle_3_deg 11.165 r_dihedral_angle_1_deg 6.309 r_scangle_it 3.932 r_scbond_it 2.604 r_mcangle_it 1.652 r_mcbond_it 1.238 r_angle_refined_deg 1.2 r_angle_other_deg 0.752 r_symmetry_vdw_other 0.263 r_nbd_other 0.198 r_nbd_refined 0.184 r_nbtor_refined 0.172 r_symmetry_vdw_refined 0.152 r_symmetry_hbond_refined 0.131 r_xyhbond_nbd_refined 0.125 r_nbtor_other 0.08 r_chiral_restr 0.066 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1698 Nucleic Acid Atoms Solvent Atoms 139 Heterogen Atoms 21
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing