2JVF
Solution structure of M7, a computationally-designed artificial protein
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H TOCSY | 1.0 mM M7, 25 mM sodium phosphate, 0.05 % sodium azide | 95% H2O/5% D2O | 25 | 6.5 | ambient | 298 | |
2 | 2D 1H-1H NOESY | 1.0 mM M7, 25 mM sodium phosphate, 0.05 % sodium azide | 95% H2O/5% D2O | 25 | 6.5 | ambient | 298 | |
3 | 2D 1H-15N HSQC | 1.3 mM [U-98% 15N] M7, 25 mM sodium phosphate, 0.05 % sodium azide | 95% H2O/5% D2O | 25 | 6.5 | ambient | 298 | |
4 | 3D 1H-15N TOCSY-HSQC | 1.3 mM [U-98% 15N] M7, 25 mM sodium phosphate, 0.05 % sodium azide | 95% H2O/5% D2O | 25 | 6.5 | ambient | 298 | |
5 | 3D 1H-15N NOESY-HSQC | 1.3 mM [U-98% 15N] M7, 25 mM sodium phosphate, 0.05 % sodium azide | 95% H2O/5% D2O | 25 | 6.5 | ambient | 298 | |
6 | 2D 1H-15N HTQC | 1.3 mM [U-98% 15N] M7, 25 mM sodium phosphate, 0.05 % sodium azide | 95% H2O/5% D2O | 25 | 6.5 | ambient | 298 | |
7 | 2D 1H-1H TOCSY | 1.0 mM M7, 25 mM sodium phosphate, 0.05 % sodium azide | 100% D2O | 25 | 6.5 | ambient | 298 | |
8 | 2D 1H-1H NOESY | 1.0 mM M7, 25 mM sodium phosphate, 0.05 % sodium azide | 100% D2O | 25 | 6.5 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 500 |
NMR Refinement | ||
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Method | Details | Software |
torsion angle dynamics | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 3.5 | Bruker Biospin |
2 | processing | XwinNMR | 3.5 | Bruker Biospin |
3 | data analysis | Felix | 2000 | Accelrys Software Inc. |
4 | structure solution | DYANA | 1.5 | Guntert, P. et al. |
5 | refinement | Discover | 2000 | Accelrys Software Inc. |