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Solution NMR structure of uncharacterized lipoprotein yajI from Escherichia coli. Northeast Structural Genomics target ER540
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D SIMULTANEOUS CN-NOESY 1.77 mM [U-100% 13C; U-100% 15N] Lipoprotein yajI 93% H2O/7% D2O 5.5 ambient 298 2 2D 1H-15N HSQC 1.77 mM [U-100% 13C; U-100% 15N] Lipoprotein yajI 93% H2O/7% D2O 5.5 ambient 298 3 3D HNCO 1.77 mM [U-100% 13C; U-100% 15N] Lipoprotein yajI 93% H2O/7% D2O 5.5 ambient 298 4 4,3D GFT CABCACONHN 1.77 mM [U-100% 13C; U-100% 15N] Lipoprotein yajI 93% H2O/7% D2O 5.5 ambient 298 5 4,3D GFT HNNCABCA 1.77 mM [U-100% 13C; U-100% 15N] Lipoprotein yajI 93% H2O/7% D2O 5.5 ambient 298 6 4,3D GFT HCCH 1.77 mM [U-100% 13C; U-100% 15N] Lipoprotein yajI 93% H2O/7% D2O 5.5 ambient 298 7 4,3D GFT HABCABCONHN 1.77 mM [U-100% 13C; U-100% 15N] Lipoprotein yajI 93% H2O/7% D2O 5.5 ambient 298 8 2D 1H-13C HSQC 0.77 mM [U-10% 13C; U-99% 15N] Lipoprotein yajI 95% H2O/5% D2O 5.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800 2 Varian INOVA 600
NMR Refinement Method Details Software distance geometry, simulated annealing, molecular dynamics, torsion angle dynamics CNS
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement CNS 1.2 Brunger, Adams, Clore, Gros, Nilges and Read 2 structure solution CYANA 2.1 Guntert, Mumenthaler and Wuthrich 3 data analysis AutoStructure 2.1.1 Huang, Tejero, Powers and Montelione 4 data analysis XEASY 1.3.1 Bartels et al. 5 processing NMRPipe 2.3 Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 6 collection TopSpin 1.3 Bruker Biospin 7 collection VNMR Varian 8 chemical shift assignment AutoAssign 2.4.0 Zimmerman, Moseley, Kulikowski and Montelione