2KC9
Structure of E. coli toxin RelE (R81A/R83A) mutant in the free state
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.5 mM [U-13C; U-15N] RelE-1, 25 mM sodium phosphate-2, 500 mM sodium chloride-3, 1 mM DTT-4, 0.5 mM sodium azide-5 | 90% H2O/10% D2O | 0.5 | 6.5 | ambient | 296.5 | |
2 | 3D HNCACB | 0.5 mM [U-13C; U-15N] RelE-1, 25 mM sodium phosphate-2, 500 mM sodium chloride-3, 1 mM DTT-4, 0.5 mM sodium azide-5 | 90% H2O/10% D2O | 0.5 | 6.5 | ambient | 296.5 | |
3 | 3D C(CO)NH | 0.5 mM [U-13C; U-15N] RelE-1, 25 mM sodium phosphate-2, 500 mM sodium chloride-3, 1 mM DTT-4, 0.5 mM sodium azide-5 | 90% H2O/10% D2O | 0.5 | 6.5 | ambient | 296.5 | |
4 | 3D HNCO | 0.5 mM [U-13C; U-15N] RelE-1, 25 mM sodium phosphate-2, 500 mM sodium chloride-3, 1 mM DTT-4, 0.5 mM sodium azide-5 | 90% H2O/10% D2O | 0.5 | 6.5 | ambient | 296.5 | |
5 | 3D H(CCO)NH | 0.5 mM [U-13C; U-15N] RelE-1, 25 mM sodium phosphate-2, 500 mM sodium chloride-3, 1 mM DTT-4, 0.5 mM sodium azide-5 | 90% H2O/10% D2O | 0.5 | 6.5 | ambient | 296.5 | |
6 | 3D 1H-15N NOESY | 0.5 mM [U-13C; U-15N] RelE-1, 25 mM sodium phosphate-2, 500 mM sodium chloride-3, 1 mM DTT-4, 0.5 mM sodium azide-5 | 90% H2O/10% D2O | 0.5 | 6.5 | ambient | 296.5 | |
7 | 2D 1H-13C HSQC | 0.5 mM [U-13C; U-15N] RelE-6, 25 mM sodium phosphate-7, 500 mM sodium chloride-8, 1 mM DTT-9, 0.5 mM sodium azide-10 | 100% D2O | 0.5 | 6.5 | ambient | 296.5 | |
8 | 3D HCCH-TOCSY | 0.5 mM [U-13C; U-15N] RelE-6, 25 mM sodium phosphate-7, 500 mM sodium chloride-8, 1 mM DTT-9, 0.5 mM sodium azide-10 | 100% D2O | 0.5 | 6.5 | ambient | 296.5 | |
9 | 3D HCCH-COSY | 0.5 mM [U-13C; U-15N] RelE-6, 25 mM sodium phosphate-7, 500 mM sodium chloride-8, 1 mM DTT-9, 0.5 mM sodium azide-10 | 100% D2O | 0.5 | 6.5 | ambient | 296.5 | |
10 | 3D 1H-13C NOESY | 0.5 mM [U-13C; U-15N] RelE-6, 25 mM sodium phosphate-7, 500 mM sodium chloride-8, 1 mM DTT-9, 0.5 mM sodium azide-10 | 100% D2O | 0.5 | 6.5 | ambient | 296.5 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 500 |
2 | Bruker | AVANCE | 800 |
NMR Refinement | ||
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Method | Details | Software |
torsion angle dynamics, simulated annealing | TopSpin |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | 2.0 | Bruker Biospin |
2 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
3 | data analysis | XEASY | Bartels et al. | |
4 | peak picking | XEASY | Bartels et al. | |
5 | chemical shift assignment | XEASY | Bartels et al. | |
6 | structure solution | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
7 | automated noe peak assignments | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
8 | structure solution | CNS | 1.1 | Brunger, Adams, Clore, Gros, Nilges and Read |
9 | refinement | CNS | 1.1 | Brunger, Adams, Clore, Gros, Nilges and Read |
10 | structure analysis | MOLMOL | Koradi, Billeter and Wuthrich | |
11 | data analysis | ProcheckNMR | Laskowski and MacArthur | |
12 | collection | VNMR | Varian |