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Human NEDD4 3RD WW Domain Complex with The Human T-cell Leukemia virus 1 GAG-Pro poliprotein Derived Peptide SDPQIPPPYVEP
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1 mM [U-100% 15N] PROTEIN-1; 3 mM PEPTIDE-2; 20 mM sodium phosphate-3; 0.02 v/v sodium azide-4; 90% H2O/10% D2O 90% H2O/10% D2O 7.00 ambient 288 2 2D 1H-1H TOCSY 1 mM [U-100% 15N] PROTEIN-1; 3 mM PEPTIDE-2; 20 mM sodium phosphate-3; 0.02 v/v sodium azide-4; 90% H2O/10% D2O 90% H2O/10% D2O 7.00 ambient 288 3 2D 1H-1H NOESY 1 mM [U-100% 15N] PROTEIN-1; 3 mM PEPTIDE-2; 20 mM sodium phosphate-3; 0.02 v/v sodium azide-4; 90% H2O/10% D2O 90% H2O/10% D2O 7.00 ambient 288 4 3D CBCA(CO)NH 1 mM [U-100% 13C; U-100% 15N] PROTEIN-5; 3 mM PEPTIDE-6; 20 mM sodium phosphate-7; 0.02 v/v sodium azide-8; 90% H2O/10% D2O 90% H2O/10% D2O 7.00 ambient 288 5 3D HNCACB 1 mM [U-100% 13C; U-100% 15N] PROTEIN-5; 3 mM PEPTIDE-6; 20 mM sodium phosphate-7; 0.02 v/v sodium azide-8; 90% H2O/10% D2O 90% H2O/10% D2O 7.00 ambient 288 6 3D HCCH-TOCSY 1 mM [U-100% 13C; U-100% 15N] PROTEIN-5; 3 mM PEPTIDE-6; 20 mM sodium phosphate-7; 0.02 v/v sodium azide-8; 90% H2O/10% D2O 90% H2O/10% D2O 7.00 ambient 288 7 3D 1H-15N NOESY 1 mM [U-100% 15N] PROTEIN-1; 3 mM PEPTIDE-2; 20 mM sodium phosphate-3; 0.02 v/v sodium azide-4; 90% H2O/10% D2O 90% H2O/10% D2O 7.00 ambient 288 8 3D 1H-13C NOESY 1 mM [U-100% 13C; U-100% 15N] PROTEIN-5; 3 mM PEPTIDE-6; 20 mM sodium phosphate-7; 0.02 v/v sodium azide-8; 90% H2O/10% D2O 90% H2O/10% D2O 7.00 ambient 288 9 3D 1H-15N TOCSY 1 mM [U-100% 15N] PROTEIN-1; 3 mM PEPTIDE-2; 20 mM sodium phosphate-3; 0.02 v/v sodium azide-4; 90% H2O/10% D2O 90% H2O/10% D2O 7.00 ambient 288
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600 2 Bruker AVANCE 700
NMR Refinement Method Details Software DGSA-distance geometry simulated annealing CNSSOLVE
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 120 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution CNSSOLVE Brunger, Adams, Clore, Gros, Nilges and Read 2 refinement CNSSOLVE Brunger, Adams, Clore, Gros, Nilges and Read 3 chemical shift assignment XEASY Bartels et al. 4 peak picking XEASY Bartels et al. 5 data analysis XEASY Bartels et al. 6 processing TopSpin Bruker Biospin 7 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax