2KRI

Structure of a complex between domain V of beta2-glycoprotein I and the fourth ligand-binding module from LDLR determined with Haddock

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	600 uM [U-100% 13C; U-100% 15N] entity_1-4, 300 uM [U-100% 15N] entity_1-5, 515 uM [U-100% 15N] entity_1-6	90% H2O/10% D2O	25	7.0	ambient	298
2	2D 1H-15N HSQC	1 mM [U-100% 13C; U-100% 15N] entity_2-1, 100 uM [U-100% 15N] entity_2-2, 300 uM [U-100% 15N] entity_2-3	90% H2O/10% D2O	25	7.0	ambient	298
3	3D HNCA	600 uM [U-100% 13C; U-100% 15N] entity_1-4, 300 uM [U-100% 15N] entity_1-5, 515 uM [U-100% 15N] entity_1-6	90% H2O/10% D2O	25	7.0	ambient	298
4	3D HNCACB	600 uM [U-100% 13C; U-100% 15N] entity_1-4, 300 uM [U-100% 15N] entity_1-5, 515 uM [U-100% 15N] entity_1-6	90% H2O/10% D2O	25	7.0	ambient	298
5	3D HN(CO)CA	600 uM [U-100% 13C; U-100% 15N] entity_1-4, 300 uM [U-100% 15N] entity_1-5, 515 uM [U-100% 15N] entity_1-6	90% H2O/10% D2O	25	7.0	ambient	298
6	3D HNCA	1 mM [U-100% 13C; U-100% 15N] entity_2-1, 100 uM [U-100% 15N] entity_2-2, 300 uM [U-100% 15N] entity_2-3	90% H2O/10% D2O	25	7.0	ambient	298
7	3D CBCA(CO)NH	1 mM [U-100% 13C; U-100% 15N] entity_2-1, 100 uM [U-100% 15N] entity_2-2, 300 uM [U-100% 15N] entity_2-3	90% H2O/10% D2O	25	7.0	ambient	298
8	3D HN(CO)CA	1 mM [U-100% 13C; U-100% 15N] entity_2-1, 100 uM [U-100% 15N] entity_2-2, 300 uM [U-100% 15N] entity_2-3	90% H2O/10% D2O	25	7.0	ambient	298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	UNITY	500

NMR Refinement
Method	Details	Software
simulated annealing		Gifa

NMR Ensemble Information
Conformer Selection Criteria	lowest haddock score
Conformers Calculated Total Number	200
Conformers Submitted Total Number	1
Representative Model	1 (lowest haddock score)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	processing	Gifa	4.3	Delsuc
2	data analysis	Gifa	4.3	Delsuc
3	collection	VNMR		Varian
4	structure solution	HADDOCK	2.0	Bonvin
5	data analysis	xcrvfit	4.0.12	Robert Boyko, Brian Sykes
6	refinement	HADDOCK	2.0	Bonvin

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.