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Solution NMR structure of Sterol Carrier Protein - 2 from Aedes aegypti (AeSCP-2) complex with C16 fatty acid (palmitate)
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 2 mM [U-100% 13C; U-100% 15N] AeSCP-2-PA-1, 1 mM [U-100% 15N] AeSCP-2-PA-2 93% H2O/7% D2O 10 7.8 ambient 298 2 2D 1H-13C HSQC 2 mM [U-100% 13C; U-100% 15N] AeSCP-2-PA-1, 1 mM [U-100% 15N] AeSCP-2-PA-2 93% H2O/7% D2O 10 7.8 ambient 298 3 3D CBCA(CO)NH 2 mM [U-100% 13C; U-100% 15N] AeSCP-2-PA-1, 1 mM [U-100% 15N] AeSCP-2-PA-2 93% H2O/7% D2O 10 7.8 ambient 298 4 3D HNCACB 2 mM [U-100% 13C; U-100% 15N] AeSCP-2-PA-1, 1 mM [U-100% 15N] AeSCP-2-PA-2 93% H2O/7% D2O 10 7.8 ambient 298 5 3D HCCH-TOCSY 2 mM [U-100% 13C; U-100% 15N] AeSCP-2-PA-1, 1 mM [U-100% 15N] AeSCP-2-PA-2 93% H2O/7% D2O 10 7.8 ambient 298 6 3D H(CCO)NH 2 mM [U-100% 13C; U-100% 15N] AeSCP-2-PA-1, 1 mM [U-100% 15N] AeSCP-2-PA-2 93% H2O/7% D2O 10 7.8 ambient 298 7 3D 1H-15N NOESY 2 mM [U-100% 13C; U-100% 15N] AeSCP-2-PA-1, 1 mM [U-100% 15N] AeSCP-2-PA-2 93% H2O/7% D2O 10 7.8 ambient 298 8 3D 1H-13C NOESY 2 mM [U-100% 13C; U-100% 15N] AeSCP-2-PA-1, 1 mM [U-100% 15N] AeSCP-2-PA-2 93% H2O/7% D2O 10 7.8 ambient 298 9 3D HNCO 2 mM [U-100% 13C; U-100% 15N] AeSCP-2-PA-1, 1 mM [U-100% 15N] AeSCP-2-PA-2 93% H2O/7% D2O 10 7.8 ambient 298 10 15N,13C filtered 1H-13C NOESY 2 mM [U-100% 13C; U-100% 15N] AeSCP-2-PA-1, 1 mM [U-100% 15N] AeSCP-2-PA-2 93% H2O/7% D2O 10 7.8 ambient 298 11 2D 1H-15N HSQC 2 mM [U-100% 15N] AeSCP-2-PA-3 93% H2O/7% D2O 10 7.8 ambient 298 12 2D 1H-15N TROSY 2 mM [U-100% 15N] AeSCP-2-PA-3 93% H2O/7% D2O 10 7.8 ambient 298 13 2D 1H-15N HSQC 2 mM [U-100% 15N] AeSCP-2-PA-4 93% H2O/7% D2O 10 7.8 ambient 298 14 2D 1H-15N TROSY 2 mM [U-100% 15N] AeSCP-2-PA-4 93% H2O/7% D2O 10 7.8 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 600 2 Varian INOVA 900
NMR Refinement Method Details Software simulated annealing CYANA
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (fewest violations)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution CYANA Guntert, Mumenthaler and Wuthrich 2 data analysis MOLMOL Koradi, Billeter and Wuthrich 3 processing NMRDraw Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 4 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 5 chemical shift assignment PINE Bahrami, Markley, Assadi, and Eghbalnia 6 data analysis PSVS Bhattacharya and Montelione 7 data analysis TALOS Cornilescu, Delaglio and Bax 8 collection VnmrJ Varian 9 data analysis XEASY Bartels et al. 10 refinement CYANA Guntert, Mumenthaler and Wuthrich