2KUB
Solution structure of the alpha subdomain of the major non-repeat unit of Fap1 fimbriae of Streptococcus parasanguis
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.1-0.5 mM [U-100% 13C; U-100% 15N] Fap1_NRalpha-1 | 95% H2O/5% D2O | 0.150 | 8 | ambient | 303 | |
2 | 3D CBCA(CO)NH | 0.1-0.5 mM [U-100% 13C; U-100% 15N] Fap1_NRalpha-1 | 95% H2O/5% D2O | 0.150 | 8 | ambient | 303 | |
3 | 3D HNCACB | 0.1-0.5 mM [U-100% 13C; U-100% 15N] Fap1_NRalpha-1 | 95% H2O/5% D2O | 0.150 | 8 | ambient | 303 | |
4 | 3D HN(CO)CA | 0.1-0.5 mM [U-100% 13C; U-100% 15N] Fap1_NRalpha-1 | 95% H2O/5% D2O | 0.150 | 8 | ambient | 303 | |
5 | 2D 1H-15N HSQC | 0.1-0.5 mM [U-100% 13C; U-100% 15N] Fap1_NRalpha-1 | 95% H2O/5% D2O | 0.150 | 8 | ambient | 303 | |
6 | 3D HCCH-TOCSY | 0.1-0.5 mM [U-100% 13C; U-100% 15N] Fap1_NRalpha-1 | 95% H2O/5% D2O | 0.150 | 8 | ambient | 303 | |
7 | 3D 1H-15N NOESY | 0.1-0.5 mM [U-100% 13C; U-100% 15N] Fap1_NRalpha-1 | 95% H2O/5% D2O | 0.150 | 8 | ambient | 303 | |
8 | 3D 1H-13C NOESY | 0.1-0.5 mM [U-100% 13C; U-100% 15N] Fap1_NRalpha-1 | 95% H2O/5% D2O | 0.150 | 8 | ambient | 303 | |
9 | 3D HNCO | 0.1-0.5 mM [U-100% 13C; U-100% 15N] Fap1_NRalpha-1 | 95% H2O/5% D2O | 0.150 | 8 | ambient | 303 | |
10 | 2D 1H-15N HSQC | 0.1-0.5 mM [U-100% 13C; U-100% 15N] Fap1_NRalpha-1 | 95% H2O/5% D2O | 0.150 | 8 | ambient | 303 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 500 |
2 | Bruker | AVANCE | 800 |
3 | Oxford | OMEGA | 950 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing, torsion angle dynamics | ARIA |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
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Details | The structure was determined using a combination of NOE and residual dipolar coupling data. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure solution | ARIA | 2.3 | Linge, O'Donoghue, Nilges |
2 | refinement | ARIA | 2.3 | Linge, O'Donoghue, Nilges |
3 | refinement | CNS | 1.2 | Brunger, Adams, Clore, Gros, Nilges, Read |