2KXX
NMR Structure of Escherichia coli BamE, a Lipoprotein Component of the beta-Barrel Assembly Machinery Complex
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.5 mM [U-100% 13C; U-100% 15N] E. coli protein, 15 % D2O, 85 % H2O, 20 mM Na2HPO4/NaH2PO4 | 85% H2O/15% D2O | 0.02 | 6.6 | ambient | 288 | |
2 | 3D CBCA(CO)NH | 0.5 mM [U-100% 13C; U-100% 15N] E. coli protein, 15 % D2O, 85 % H2O, 20 mM Na2HPO4/NaH2PO4 | 85% H2O/15% D2O | 0.02 | 6.6 | ambient | 288 | |
3 | 3D 1H-15N NOESY | 0.5 mM [U-100% 13C; U-100% 15N] E. coli protein, 15 % D2O, 85 % H2O, 20 mM Na2HPO4/NaH2PO4 | 85% H2O/15% D2O | 0.02 | 6.6 | ambient | 288 | |
4 | 3D HNCO | 0.5 mM [U-100% 13C; U-100% 15N] E. coli protein, 15 % D2O, 85 % H2O, 20 mM Na2HPO4/NaH2PO4 | 85% H2O/15% D2O | 0.02 | 6.6 | ambient | 288 | |
5 | 3D HNCACB | 0.5 mM [U-100% 13C; U-100% 15N] E. coli protein, 15 % D2O, 85 % H2O, 20 mM Na2HPO4/NaH2PO4 | 85% H2O/15% D2O | 0.02 | 6.6 | ambient | 288 | |
6 | 3D HN(CO)CA | 0.5 mM [U-100% 13C; U-100% 15N] E. coli protein, 15 % D2O, 85 % H2O, 20 mM Na2HPO4/NaH2PO4 | 85% H2O/15% D2O | 0.02 | 6.6 | ambient | 288 | |
7 | 3D 1H-13C NOESY | 0.5 mM [U-100% 13C; U-100% 15N] E. coli protein, 15 % D2O, 85 % H2O, 20 mM Na2HPO4/NaH2PO4 | 85% H2O/15% D2O | 0.02 | 6.6 | ambient | 288 | |
8 | 2D 1H-1H COSY | 0.5 mM [U-100% 13C; U-100% 15N] E. coli protein, 15 % D2O, 85 % H2O, 20 mM Na2HPO4/NaH2PO4 | 85% H2O/15% D2O | 0.02 | 6.6 | ambient | 288 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | UNITY | 500 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | CYANA |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (fewest violations) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure solution | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
2 | chemical shift assignment | Sparky | 3.113 | Goddard |
3 | peak picking | Sparky | 3.113 | Goddard |
4 | refinement | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
5 | refinement | ARIA | 2.0 | Rieping, Habeck, Bardiaux, Bernard, Malliavin and Nilges |