2L4N
Solution Structure of the Chemokine CCL21
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated_NOESY | 0.500 mM [U-100% 13C; U-100% 15N] CCL21/SLC/6Ckine/Exodus-2, 10 % D2O, 25 mM [U-2H] MES, 0.02 % sodium azide, 90% H2O, 10% D2O | 90% H2O/10% D2O | 21 mM | 6.1 | AMBIENT | 298 | |
2 | 3D_13C-separated_NOESY | 0.500 mM [U-100% 13C; U-100% 15N] CCL21/SLC/6Ckine/Exodus-2, 10 % D2O, 25 mM [U-2H] MES, 0.02 % sodium azide, 90% H2O, 10% D2O | 90% H2O/10% D2O | 21 mM | 6.1 | AMBIENT | 298 | |
3 | 3D_13C-separated_NOESY (AROMATIC) | 0.500 mM [U-100% 13C; U-100% 15N] CCL21/SLC/6Ckine/Exodus-2, 10 % D2O, 25 mM [U-2H] MES, 0.02 % sodium azide, 90% H2O, 10% D2O | 90% H2O/10% D2O | 21 mM | 6.1 | AMBIENT | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 500 |
NMR Refinement | ||
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Method | Details | Software |
AUTOMATED METHODS WERE USED FOR BACKBONE CHEMICAL SHIFT ASSIGNMENT AND ITERATIVE NOE REFINEMENT. FINAL STRUCTURES WERE OBTAINED BY MOLECULAR DYNAMICS IN EXPLICIT SOLVENT | CCL21 STRUCTURES ARE BASED ON A TOTAL OF 743 NOE CONSTRAINTS (355 INTRA, 170 SEQUENTIAL, 64 MEDIUM, 154 LONG RANGE AND 90 PHI AND PSI DIHEDRAL ANGLE CONSTRAINTS) | CYANA |
NMR Ensemble Information | |
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Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
2 | chemical shift assignment | XEASY | Bartels et al. | |
3 | data analysis | XEASY | Bartels et al. | |
4 | chemical shift assignment | GARANT | Bartels, Guntert, Billeter and Wuthrich | |
5 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
6 | collection | XwinNMR | Bruker Biospin | |
7 | refinement | CYANA | Guntert, Mumenthaler and Wuthrich |