2L4W

NMR structure of the Xanthomonas VirB7

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	0.2 mM [U-99% 13C; U-99% 15N] VirB7 - Xac2622-1, 10 mM [U-99% 2H] sodium acetate-2, 50 mM sodium chloride-3	93% H2O/7% D2O	0.06	5.0	ambient	313
2	2D 1H-13C HSQC	0.2 mM [U-99% 13C; U-99% 15N] VirB7 - Xac2622-4, 10 mM [U-99% 2H] sodium acetate-5, 50 mM sodium chloride-6	100% D2O	0.06	5.0	ambient	313
3	2D 1H-1H TOCSY	0.2 mM [U-99% 13C; U-99% 15N] VirB7 - Xac2622-4, 10 mM [U-99% 2H] sodium acetate-5, 50 mM sodium chloride-6	100% D2O	0.06	5.0	ambient	313
4	2D 1H-1H NOESY	0.2 mM [U-99% 13C; U-99% 15N] VirB7 - Xac2622-1, 10 mM [U-99% 2H] sodium acetate-2, 50 mM sodium chloride-3	93% H2O/7% D2O	0.06	5.0	ambient	313
5	3D HNCO	0.2 mM [U-99% 13C; U-99% 15N] VirB7 - Xac2622-1, 10 mM [U-99% 2H] sodium acetate-2, 50 mM sodium chloride-3	93% H2O/7% D2O	0.06	5.0	ambient	313
6	3D HN(CA)CO	0.2 mM [U-99% 13C; U-99% 15N] VirB7 - Xac2622-1, 10 mM [U-99% 2H] sodium acetate-2, 50 mM sodium chloride-3	93% H2O/7% D2O	0.06	5.0	ambient	313
7	3D HNCA	0.2 mM [U-99% 13C; U-99% 15N] VirB7 - Xac2622-1, 10 mM [U-99% 2H] sodium acetate-2, 50 mM sodium chloride-3	93% H2O/7% D2O	0.06	5.0	ambient	313
8	3D HN(CO)CA	0.2 mM [U-99% 13C; U-99% 15N] VirB7 - Xac2622-1, 10 mM [U-99% 2H] sodium acetate-2, 50 mM sodium chloride-3	93% H2O/7% D2O	0.06	5.0	ambient	313
9	3D HNCACB	0.2 mM [U-99% 13C; U-99% 15N] VirB7 - Xac2622-1, 10 mM [U-99% 2H] sodium acetate-2, 50 mM sodium chloride-3	93% H2O/7% D2O	0.06	5.0	ambient	313
10	3D CBCA(CO)NH	0.2 mM [U-99% 13C; U-99% 15N] VirB7 - Xac2622-1, 10 mM [U-99% 2H] sodium acetate-2, 50 mM sodium chloride-3	93% H2O/7% D2O	0.06	5.0	ambient	313
11	2D 1H-1H NOESY	0.2 mM [U-99% 13C; U-99% 15N] VirB7 - Xac2622-4, 10 mM [U-99% 2H] sodium acetate-5, 50 mM sodium chloride-6	100% D2O	0.06	5.0	ambient	313
12	3D C(CO)NH	0.2 mM [U-99% 13C; U-99% 15N] VirB7 - Xac2622-1, 10 mM [U-99% 2H] sodium acetate-2, 50 mM sodium chloride-3	93% H2O/7% D2O	0.06	5.0	ambient	313
13	3D HBHA(CO)NH	0.2 mM [U-99% 13C; U-99% 15N] VirB7 - Xac2622-1, 10 mM [U-99% 2H] sodium acetate-2, 50 mM sodium chloride-3	93% H2O/7% D2O	0.06	5.0	ambient	313
14	3D H(CCO)NH	0.2 mM [U-99% 13C; U-99% 15N] VirB7 - Xac2622-1, 10 mM [U-99% 2H] sodium acetate-2, 50 mM sodium chloride-3	93% H2O/7% D2O	0.06	5.0	ambient	313
15	3D HCCH-TOCSY	0.2 mM [U-99% 13C; U-99% 15N] VirB7 - Xac2622-4, 10 mM [U-99% 2H] sodium acetate-5, 50 mM sodium chloride-6	100% D2O	0.06	5.0	ambient	313
16	3D HNHA	0.2 mM [U-99% 13C; U-99% 15N] VirB7 - Xac2622-1, 10 mM [U-99% 2H] sodium acetate-2, 50 mM sodium chloride-3	93% H2O/7% D2O	0.06	5.0	ambient	313
17	3D 1H-15N NOESY	0.2 mM [U-99% 13C; U-99% 15N] VirB7 - Xac2622-1, 10 mM [U-99% 2H] sodium acetate-2, 50 mM sodium chloride-3	93% H2O/7% D2O	0.06	5.0	ambient	313
18	3D 1H-15N TOCSY	0.2 mM [U-99% 13C; U-99% 15N] VirB7 - Xac2622-1, 10 mM [U-99% 2H] sodium acetate-2, 50 mM sodium chloride-3	93% H2O/7% D2O	0.06	5.0	ambient	313
19	3D 1H-13C NOESY	0.2 mM [U-99% 13C; U-99% 15N] VirB7 - Xac2622-4, 10 mM [U-99% 2H] sodium acetate-5, 50 mM sodium chloride-6	100% D2O	0.06	5.0	ambient	313
20	2D 1H-15N HSQC J-modulated	0.2 mM [U-99% 13C; U-99% 15N] VirB7 - Xac2622-1, 10 mM [U-99% 2H] sodium acetate-2, 50 mM sodium chloride-3	93% H2O/7% D2O	0.06	5.0	ambient	303

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	DRX	500
2	Varian	INOVA	600
3	Bruker	AVANCE	800

NMR Refinement
Method	Details	Software
torsion angle dynamics, simulated annealing cartesian dynamics	300 structures were calculated using the program Cyana. 50 structures with lowest target function were selected for further refinement., 50 Cyana structures were refined in explicit solvent using the HADDOCK program. 20 lowest energy structures were selected.	NMRPipe

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	300
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	processing	NMRPipe	97.027.12.56	Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2	peak picking	CcpNmr Analysis	Version 1.0. Release 15	CCPN
3	chemical shift assignment	CcpNmr Analysis	Version 1.0. Release 15	CCPN
4	dihedral angle prediction	TALOS		Cornilescu, Delaglio and Bax
5	structure solution	CYANA	2.1	Guntert, Mumenthaler and Wuthrich
6	refinement	HADDOCK	2.0	Cyril Dominguez, Rolf Boelens and Alexandre M.J.J. Bonvin
7	rdc data analysis	PALES	2.1	Markus Zweckstetter, Ad Bax
8	rdc data analysis	Module 2	2	Patrice Dosset, Martin Blackledge
9	processing	NMRDraw		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
10	refinement	CNS	1.2	Brunger, Adams, Clore, Gros, Nilges and Read