2L50
Solution structure of apo S100A16
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.6 mM [U-100% 15N] APOS100A16 | 90% H2O/10% D2O | 0.1 | 5.5 | ambient | 298 | |
2 | 2D 1H-13C HSQC | 0.6 mM [U-100% 13C; U-100% 15N] APOS100A16 | 90% H2O/10% D2O | 0.1 | 5.5 | ambient | 298 | |
3 | 2D 1H-1H NOESY | 0.6 mM [U-100% 15N] APOS100A16 | 90% H2O/10% D2O | 0.1 | 5.5 | ambient | 298 | |
4 | 3D CBCA(CO)NH | 0.6 mM [U-100% 13C; U-100% 15N] APOS100A16 | 90% H2O/10% D2O | 0.1 | 5.5 | ambient | 298 | |
5 | 3D HNCO | 0.6 mM [U-100% 13C; U-100% 15N] APOS100A16 | 90% H2O/10% D2O | 0.1 | 5.5 | ambient | 298 | |
6 | 3D HNCA | 0.6 mM [U-100% 13C; U-100% 15N] APOS100A16 | 90% H2O/10% D2O | 0.1 | 5.5 | ambient | 298 | |
7 | 3D HNCACB | 0.6 mM [U-100% 13C; U-100% 15N] APOS100A16 | 90% H2O/10% D2O | 0.1 | 5.5 | ambient | 298 | |
8 | 3D HBHA(CO)NH | 0.6 mM [U-100% 15N] APOS100A16 | 90% H2O/10% D2O | 0.1 | 5.5 | ambient | 298 | |
9 | 3D HCCH-TOCSY | 0.6 mM [U-100% 13C; U-100% 15N] APOS100A16 | 90% H2O/10% D2O | 0.1 | 5.5 | ambient | 298 | |
10 | 3D 1H-15N NOESY | 0.6 mM [U-100% 15N] APOS100A16 | 90% H2O/10% D2O | 0.1 | 5.5 | ambient | 298 | |
11 | 3D 1H-13C NOESY | 0.6 mM [U-100% 13C; U-100% 15N] APOS100A16 | 90% H2O/10% D2O | 0.1 | 5.5 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 500 |
2 | Bruker | AVANCE | 700 |
3 | Bruker | AVANCE | 900 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
distance geometry | Amber |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 350 |
Conformers Submitted Total Number | 30 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | data analysis | Amber | 10.0 | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm |
2 | structure solution | Amber | 10.0 | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm |
3 | data analysis | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
4 | structure solution | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
5 | data analysis | MOLMOL | Koradi, Billeter and Wuthrich | |
6 | structure solution | ProcheckNMR | Laskowski and MacArthur | |
7 | structure solution | TALOS | Cornilescu, Delaglio and Bax | |
8 | collection | TopSpin | 2.0 | Bruker Biospin |
9 | processing | TopSpin | 2.0 | Bruker Biospin |
10 | chemical shift assignment | XEASY | Bartels et al. | |
11 | peak picking | XEASY | Bartels et al. | |
12 | chemical shift assignment | CARA | Keller and Wuthrich | |
13 | data analysis | CARA | Keller and Wuthrich | |
14 | peak picking | CARA | Keller and Wuthrich | |
15 | structure solution | WHAT IF | Vriend | |
16 | refinement | WHAT IF | Vriend |