2L5B
Solution structure of the transmembrane domain of Bcl-2 member Harakiri in micelles
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H TOCSY | 1.0-1.5 mM Hrk-TM, 200 mM D25 SDS, 5 mM D15 TCEP, 0.1 mM sodium azide, 35% v/v D3 methanol | 95% H2O/5% D2O | 0.2 | 3.2 | ambient | 323 | |
2 | 2D 1H-1H NOESY | 1.0-1.5 mM Hrk-TM, 200 mM D25 SDS, 5 mM D15 TCEP, 0.1 mM sodium azide, 35% v/v D3 methanol | 95% H2O/5% D2O | 0.2 | 3.2 | ambient | 323 | |
3 | 2D 1H-13C HSQC | 1.0-1.5 mM Hrk-TM, 200 mM D25 SDS, 0.1 mM sodium azide, 5 mM D15 TCEP, 35% v/v D4 methanol | 100% D2O | 0.2 | 3.2 | ambient | 323 | |
4 | 2D 1H-1H COSY | 1.0-1.5 mM Hrk-TM, 200 mM D25 SDS, 5 mM D15 TCEP, 0.1 mM sodium azide, 35% v/v D3 methanol | 95% H2O/5% D2O | 0.2 | 3.2 | ambient | 323 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | Avance | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
DGSA-distance geometry simulated annealing | TOPSPIN |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TOPSPIN | Bruker Biospin | |
2 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
3 | data analysis | PIPP | Garrett | |
4 | data analysis | SPARKY | Goddard | |
5 | data analysis | TALOS | Cornilescu, Delaglio and Bax | |
6 | structure solution | X-PLOR_NIH | Schwieters, Kuszewski, Tjandra and Clore | |
7 | refinement | X-PLOR_NIH | Schwieters, Kuszewski, Tjandra and Clore |