2L5B

Solution structure of the transmembrane domain of Bcl-2 member Harakiri in micelles


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-1H TOCSY1.0-1.5 mM Hrk-TM, 200 mM D25 SDS, 5 mM D15 TCEP, 0.1 mM sodium azide, 35% v/v D3 methanol95% H2O/5% D2O0.23.2ambient323
22D 1H-1H NOESY1.0-1.5 mM Hrk-TM, 200 mM D25 SDS, 5 mM D15 TCEP, 0.1 mM sodium azide, 35% v/v D3 methanol95% H2O/5% D2O0.23.2ambient323
32D 1H-13C HSQC1.0-1.5 mM Hrk-TM, 200 mM D25 SDS, 0.1 mM sodium azide, 5 mM D15 TCEP, 35% v/v D4 methanol100% D2O0.23.2ambient323
42D 1H-1H COSY1.0-1.5 mM Hrk-TM, 200 mM D25 SDS, 5 mM D15 TCEP, 0.1 mM sodium azide, 35% v/v D3 methanol95% H2O/5% D2O0.23.2ambient323
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAvance600
NMR Refinement
MethodDetailsSoftware
DGSA-distance geometry simulated annealingTOPSPIN
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTOPSPINBruker Biospin
2processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3data analysisPIPPGarrett
4data analysisSPARKYGoddard
5data analysisTALOSCornilescu, Delaglio and Bax
6structure solutionX-PLOR_NIHSchwieters, Kuszewski, Tjandra and Clore
7refinementX-PLOR_NIHSchwieters, Kuszewski, Tjandra and Clore