2LAS
Molecular Determinants of Paralogue-Specific SUMO-SIM Recognition
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.5 mM [U-13C; U-15N; U-2H] SUMO1, 1.0 mM M-IR2 peptide | 90% H2O/10% D2O | 0 | 6.8 | ambient | 298 | |
2 | 3D HN(COCA)CB | 0.5 mM [U-13C; U-15N; U-2H] SUMO1, 1.0 mM M-IR2 peptide | 90% H2O/10% D2O | 0 | 6.8 | ambient | 298 | |
3 | 3D HNCACB | 0.5 mM [U-13C; U-15N; U-2H] SUMO1, 1.0 mM M-IR2 peptide | 90% H2O/10% D2O | 0 | 6.8 | ambient | 298 | |
4 | 3D HNCA | 0.5 mM [U-13C; U-15N; U-2H] SUMO1, 1.0 mM M-IR2 peptide | 90% H2O/10% D2O | 0 | 6.8 | ambient | 298 | |
5 | 3D HN(CO)CA | 0.5 mM [U-13C; U-15N; U-2H] SUMO1, 1.0 mM M-IR2 peptide | 90% H2O/10% D2O | 0 | 6.8 | ambient | 298 | |
6 | 3D 15N-edited NOESYHSQC | 0.5 mM [U-15N]; perdeuterated SUMO1, 0.6 mM M-IR2 peptide | 90% H2O/10% D2O | 0 | 6.8 | ambient | 298 | |
7 | 2D 1H-1H TOCSY | 0.5 mM [U-15N]; perdeuterated SUMO1, 0.6 mM M-IR2 peptide | 90% H2O/10% D2O | 0 | 6.8 | ambient | 298 | |
8 | 2D 1H-1H NOESY | 0.5 mM [U-15N]; perdeuterated SUMO1, 0.6 mM M-IR2 peptide | 90% H2O/10% D2O | 0 | 6.8 | ambient | 298 | |
9 | 2D 1H-13C HSQC aliphatic | 0.6 mM [U-15N; U-2H] SUMO1, 0.4 mM M-IR2 peptide | 100% D2O | 0 | 6.8 | ambient | 298 | |
10 | 2D 1H-13C HSQC aromatic | 0.6 mM [U-15N; U-2H] SUMO1, 0.4 mM M-IR2 peptide | 100% D2O | 0 | 6.8 | ambient | 298 | |
11 | 2D 1H-1H TOCSY | 0.6 mM [U-15N; U-2H] SUMO1, 0.4 mM M-IR2 peptide | 100% D2O | 0 | 6.8 | ambient | 298 | |
12 | 2D 1H-1H TOCSY | 0.6 mM [U-15N; U-2H] SUMO1, 0.4 mM M-IR2 peptide | 100% D2O | 0 | 6.8 | ambient | 298 | |
13 | 2D 1H-13C HSQC-TOCSY | 0.6 mM [U-15N; U-2H] SUMO1, 0.4 mM M-IR2 peptide | 100% D2O | 0 | 6.8 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | TopSpin |
NMR Ensemble Information | |
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Conformer Selection Criteria | all calculated structures submitted |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | 2.1 | Bruker |
2 | processing | TopSpin | 2.1 | Bruker |
3 | chemical shift assignment | Sparky | 3.113 | Goddard |
4 | structure solution | HADDOCK | 2.0 | Bonvin |
5 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
6 | data analysis | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
7 | refinement | HADDOCK | Bonvin |