2LGK
NMR Structure of UHRF1 PHD domains in a complex with histone H3 peptide
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 1.5 mM [U-100% 13C; U-100% 15N] entity_1-1, 1.8 mM entity_2-2 | 90% H2O/10% D2O | 150 | 7.0 | ambient | 293.13 | |
2 | 2D 1H-13C HSQC aliphatic | 1.5 mM [U-100% 13C; U-100% 15N] entity_1-1, 1.8 mM entity_2-2 | 90% H2O/10% D2O | 150 | 7.0 | ambient | 293.13 | |
3 | 2D 1H-13C HSQC aromatic | 1.5 mM [U-100% 13C; U-100% 15N] entity_1-1, 1.8 mM entity_2-2 | 90% H2O/10% D2O | 150 | 7.0 | ambient | 293.13 | |
4 | 3D HNCO | 1.5 mM [U-100% 13C; U-100% 15N] entity_1-1, 1.8 mM entity_2-2 | 90% H2O/10% D2O | 150 | 7.0 | ambient | 293.13 | |
5 | 3D HNCA | 1.5 mM [U-100% 13C; U-100% 15N] entity_1-1, 1.8 mM entity_2-2 | 90% H2O/10% D2O | 150 | 7.0 | ambient | 293.13 | |
6 | 3D HN(CO)CA | 1.5 mM [U-100% 13C; U-100% 15N] entity_1-1, 1.8 mM entity_2-2 | 90% H2O/10% D2O | 150 | 7.0 | ambient | 293.13 | |
7 | 3D HNCACB | 1.5 mM [U-100% 13C; U-100% 15N] entity_1-1, 1.8 mM entity_2-2 | 90% H2O/10% D2O | 150 | 7.0 | ambient | 293.13 | |
8 | 3D CBCA(CO)NH | 1.5 mM [U-100% 13C; U-100% 15N] entity_1-1, 1.8 mM entity_2-2 | 90% H2O/10% D2O | 150 | 7.0 | ambient | 293.13 | |
9 | 3D HCCH-TOCSY | 1.5 mM [U-100% 13C; U-100% 15N] entity_1-1, 1.8 mM entity_2-2 | 90% H2O/10% D2O | 150 | 7.0 | ambient | 293.13 | |
10 | 3D HCCH-COSY | 1.5 mM [U-100% 13C; U-100% 15N] entity_1-1, 1.8 mM entity_2-2 | 90% H2O/10% D2O | 150 | 7.0 | ambient | 293.13 | |
11 | 3D 1H-15N NOESY | 1.5 mM [U-100% 13C; U-100% 15N] entity_1-1, 1.8 mM entity_2-2 | 90% H2O/10% D2O | 150 | 7.0 | ambient | 293.13 | |
12 | 3D 1H-13C NOESY aliphatic | 1.5 mM [U-100% 13C; U-100% 15N] entity_1-1, 1.8 mM entity_2-2 | 90% H2O/10% D2O | 150 | 7.0 | ambient | 293.13 | |
13 | 3D 1H-13C NOESY aromatic | 1.5 mM [U-100% 13C; U-100% 15N] entity_1-1, 1.8 mM entity_2-2 | 90% H2O/10% D2O | 150 | 7.0 | ambient | 293.13 | |
14 | 3D edited 15N/13C NOESY | 1.5 mM [U-100% 13C; U-100% 15N] entity_1-1, 1.8 mM entity_2-2 | 90% H2O/10% D2O | 150 | 7.0 | ambient | 293.13 | |
15 | 2D 1H-1H COSY | 1.5 mM [U-100% 13C; U-100% 15N] entity_1-1, 1.8 mM entity_2-2 | 90% H2O/10% D2O | 150 | 7.0 | ambient | 293.13 | |
16 | 2D 1H-1H NOESY | 1.5 mM [U-100% 13C; U-100% 15N] entity_1-1, 1.8 mM entity_2-2 | 90% H2O/10% D2O | 150 | 7.0 | ambient | 293.13 | |
17 | 2D 1H-1H TOCSY | 1.5 mM [U-100% 13C; U-100% 15N] entity_1-1, 1.8 mM entity_2-2 | 90% H2O/10% D2O | 150 | 7.0 | ambient | 293.13 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | X-PLOR NIH |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | X-PLOR NIH | 2.19 | Schwieters, Kuszewski, Tjandra and Clore |
2 | structure solution | X-PLOR NIH | 2.19 | Schwieters, Kuszewski, Tjandra and Clore |
3 | data analysis | TALOS | Cornilescu, Delaglio and Bax | |
4 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
5 | chemical shift assignment | Sparky | Goddard |