2LJ9

Partial 3d structure of the c-terminal part of the free arabidopsis thaliana cp12-2 in its oxidized form


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC1 mM [U-15N] CP12, 5 % [U-2H] D2O, 0.1-0.2 mM TSP, 95 % H2O, 25 mM potassium phosphate, 0.05 w/v sodium azide95% H2O/5% D2O7atm293
22D 1H-13C HSQC1 mM [U-100% 13C; U-100% 15N] CP12, 100 % [U-2H] D2O, 0.1-0.2 mM TSP, 25 mM potassium phosphate, 0.05 w/v sodium azide100% D2O7atm293
32D 1H-1H TOCSY1 mM CP12, 5 % [U-2H] D2O, 0.1-0.2 mM TSP, 95 % H2O, 25 mM potassium phosphate, 0.05 w/v sodium azide95% H2O/5% D2O7atm293
42D 1H-1H NOESY1 mM CP12, 5 % [U-2H] D2O, 0.1-0.2 mM TSP, 95 % H2O, 25 mM potassium phosphate, 0.05 w/v sodium azide95% H2O/5% D2O7atm293
53D CBCA(CO)NH1 mM [U-13C; U-15N] CP12, 5 % [U-2H] D2O, 0.1-0.2 mM TSP, 95 % H2O, 25 mM potassium phosphate, 0.05 w/v sodium azide95% H2O/5% D2O7atm293
63D C(CO)NH1 mM [U-13C; U-15N] CP12, 5 % [U-2H] D2O, 0.1-0.2 mM TSP, 95 % H2O, 25 mM potassium phosphate, 0.05 w/v sodium azide95% H2O/5% D2O7atm293
73D HNCO1 mM [U-13C; U-15N] CP12, 5 % [U-2H] D2O, 0.1-0.2 mM TSP, 95 % H2O, 25 mM potassium phosphate, 0.05 w/v sodium azide95% H2O/5% D2O7atm293
83D HNCA1 mM [U-13C; U-15N] CP12, 5 % [U-2H] D2O, 0.1-0.2 mM TSP, 95 % H2O, 25 mM potassium phosphate, 0.05 w/v sodium azide95% H2O/5% D2O7atm293
93D HNCACB1 mM [U-13C; U-15N] CP12, 5 % [U-2H] D2O, 0.1-0.2 mM TSP, 95 % H2O, 25 mM potassium phosphate, 0.05 w/v sodium azide95% H2O/5% D2O7atm293
103D HBHA(CO)NH1 mM [U-13C; U-15N] CP12, 5 % [U-2H] D2O, 0.1-0.2 mM TSP, 95 % H2O, 25 mM potassium phosphate, 0.05 w/v sodium azide95% H2O/5% D2O7atm293
113D HN(CO)CA1 mM [U-13C; U-15N] CP12, 5 % [U-2H] D2O, 0.1-0.2 mM TSP, 95 % H2O, 25 mM potassium phosphate, 0.05 w/v sodium azide95% H2O/5% D2O7atm293
123D H(CCO)NH1 mM [U-13C; U-15N] CP12, 5 % [U-2H] D2O, 0.1-0.2 mM TSP, 95 % H2O, 25 mM potassium phosphate, 0.05 w/v sodium azide95% H2O/5% D2O7atm293
133D 1H-15N NOESY1 mM [U-15N] CP12, 5 % [U-2H] D2O, 0.1-0.2 mM TSP, 95 % H2O, 25 mM potassium phosphate, 0.05 w/v sodium azide95% H2O/5% D2O7atm293
143D 1 15N TOCSY1 mM [U-15N] CP12, 5 % [U-2H] D2O, 0.1-0.2 mM TSP, 95 % H2O, 25 mM potassium phosphate, 0.05 w/v sodium azide95% H2O/5% D2O7atm293
152D 1H-1H TOCSY1 mM CP12, 100 % [U-2H] D2O, 0.1-0.2 mM TSP, 25 mM potassium phosphate, 0.05 w/v sodium azide100% D2O7atm293
162D 1H-1H NOESY1 mM CP12, 100 % [U-2H] D2O, 0.1-0.2 mM TSP, 25 mM potassium phosphate, 0.05 w/v sodium azide100% D2O7atm293
17HETERONUCLEAR NOE 15N1 mM [U-15N] CP12, 5 % [U-2H] D2O, 0.1-0.2 mM TSP, 95 % H2O, 25 mM potassium phosphate, 0.05 w/v sodium azide95% H2O/5% D2O7atm293
18HBHANH1 mM [U-13C; U-15N] CP12, 5 % [U-2H] D2O, 0.1-0.2 mM TSP, 95 % H2O, 25 mM potassium phosphate, 0.05 w/v sodium azide95% H2O/5% D2O7atm293
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE800
2BrukerAVANCE600
3BrukerAVANCE400
NMR Refinement
MethodDetailsSoftware
simulated annealingPROCHECK
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number150
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Additional NMR Experimental Information
DetailsSTRUCTURE DETERMINED WITH HOMONUCLEAR NOES AND TALOS- DERIVED BACKBONE ANGLES
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementPROCHECKLASKOWSKI, MACARTHUR, SMITH, JONES, HUTCHINSON, MORRIS, MOSS
2structure solutionCNSSOLVE1.2.1Brunger, Adams, Clore, Gros, Nilges and Read
3refinementCNSSOLVE1.2.1Brunger, Adams, Clore, Gros, Nilges and Read
4collectionTopSpin1.3Bruker Biospin
5processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
6processingNMRDrawDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
7data analysisNMRViewJohnson, One Moon Scientific
8peak pickingNMRViewJohnson, One Moon Scientific
9data analysisTALOSCornilescu, Delaglio and Bax