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RNA Aptamer for B. anthracis Ribosomal Protein S8
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-13C HSQC 1.6 mM [U-98% 13C; U-98% 15N] RNA 100% D2O 50 ambient 299 2 3D 1H-13C NOESY 1.6 mM [U-98% 13C; U-98% 15N] RNA 100% D2O 50 ambient 299 3 2D 1H-15N HSQC 1.5 mM [U-98% 13C; U-98% 15N] RNA 90% H2O/10% D2O 50 6.8 ambient 287 4 2D 1H-1H NOESY 1.5 mM [U-98% 13C; U-98% 15N] RNA 90% H2O/10% D2O 50 6.8 ambient 287 5 2D 1H-1H NOESY 1.6 mM [U-98% 13C; U-98% 15N] RNA 100% D2O 50 ambient 299 6 3D HCCH-COSY 1.6 mM [U-98% 13C; U-98% 15N] RNA 100% D2O 50 ambient 299 7 3D 1H-13C NOESY 1.6 mM [U-98% 13C; U-98% 15N] RNA 100% D2O 50 ambient 299 8 3D HCCH-TOCSY 1.6 mM [U-98% 13C; U-98% 15N] RNA 100% D2O 50 ambient 299 9 2D 1H-31P HetCor 1.6 mM [U-98% 13C; U-98% 15N] RNA 100% D2O 50 ambient 299 10 2D 1H-15N HNC-TOCSY-CH 1.5 mM [U-98% 13C; U-98% 15N] RNA 90% H2O/10% D2O 50 ambient 299 11 2D 1H-13C H(N)CO 1.5 mM [U-98% 13C; U-98% 15N] RNA 90% H2O/10% D2O 50 6.8 ambient 287 12 2D 1H-13C CCH-COSY 1.6 mM [U-98% 13C; U-98% 15N] RNA 100% D2O 50 ambient 299 13 2D 1H-13C HCNC 1.6 mM [U-98% 13C; U-98% 15N] RNA 100% D2O 50 ambient 299 14 2D 1H-15N HSQC 1.6 mM [U-98% 13C; U-98% 15N] RNA 100% D2O 50 ambient 299 15 2D 1H-15N HCN 1.6 mM [U-98% 13C; U-98% 15N] RNA 100% D2O 50 ambient 299
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 600 2 Varian INOVA 800 3 Varian INOVA 500
NMR Refinement Method Details Software simulated annealing X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 100 Conformers Submitted Total Number 8 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 2 data analysis Felix Accelrys Software Inc. 3 refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore