2LW6
Solution structure of an avirulence protein AvrPiz-t from pathogen Magnaportheoryzae
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.3 mM [U-100% 13C; U-100% 15N] H2O-1 | 90% H2O/10% D2O | 50 | 6.5 | ambient | 293 | |
2 | 2D 1H-13C HSQC aliphatic | 0.3 mM [U-100% 13C; U-100% 15N] H2O-1 | 90% H2O/10% D2O | 50 | 6.5 | ambient | 293 | |
3 | 3D CBCA(CO)NH | 0.3 mM [U-100% 13C; U-100% 15N] H2O-1 | 90% H2O/10% D2O | 50 | 6.5 | ambient | 293 | |
4 | 3D HNCO | 0.3 mM [U-100% 13C; U-100% 15N] H2O-1 | 90% H2O/10% D2O | 50 | 6.5 | ambient | 293 | |
5 | 3D HNCA | 0.3 mM [U-100% 13C; U-100% 15N] H2O-1 | 90% H2O/10% D2O | 50 | 6.5 | ambient | 293 | |
6 | 3D HN(CO)CA | 0.3 mM [U-100% 13C; U-100% 15N] H2O-1 | 90% H2O/10% D2O | 50 | 6.5 | ambient | 293 | |
7 | 3D HCCH-TOCSY | 0.3 mM [U-100% 13C; U-100% 15N] H2O-1 | 90% H2O/10% D2O | 50 | 6.5 | ambient | 293 | |
8 | 3D 1H-15N TOCSY | 0.3 mM [U-100% 13C; U-100% 15N] H2O-1 | 90% H2O/10% D2O | 50 | 6.5 | ambient | 293 | |
9 | 2D 1H-15N HSQC | 0.3 mM [U-99% 15N] D2O-2 | 100% D2O | 6.5 | 293 | |||
10 | 3D 1H-13C NOESY | 0.3 mM [U-100% 13C; U-100% 15N] H2O-1 | 90% H2O/10% D2O | 50 | 6.5 | ambient | 293 | |
11 | 3D HNCACB | 0.3 mM [U-100% 13C; U-100% 15N] H2O-1 | 90% H2O/10% D2O | 50 | 6.5 | ambient | 293 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | INOVA | 800 |
2 | Varian | INOVA | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
distance geometry, torsion angle dynamics | ARIA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | ARIA | Linge, O'Donoghue and Nilges | |
2 | chemical shift assignment | ARIA | Linge, O'Donoghue and Nilges | |
3 | processing | ARIA | Linge, O'Donoghue and Nilges | |
4 | refinement | ARIA | Linge, O'Donoghue and Nilges |