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HIGH RESOLUTION STRUCTURE OF RED ABALONE LYSIN DIMER
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1LYN PDB ENTRY 1LYN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.5 0.75 M (NH4)2SO4,
20 MM NH4SCN,
52.5 MM SODIUM-CITRATE-BORIC ACID BUFFER PH 4.5,
0.1 MM EDTA,
0.02% OTGP
Crystal Properties Matthews coefficient Solvent content 2.69 53.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.52 α = 90 b = 72.52 β = 90 c = 266.08 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 1998-05-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-1 SSRL BL9-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.07 40.5 99.1 0.087 4.8 3.6 44137 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.07 2.18 94.6 0.256 2.8 2.5
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 1LYN 2.07 100 42965 2197 99.1 0.2165 0.213 0.2048 0.2851 5% OF DATA
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 2 4604
RMS Deviations Key Refinement Restraint Deviation s_from_restr_planes 0.265 s_anti_bump_dis_restr 0.08 s_non_zero_chiral_vol 0.029 s_zero_chiral_vol 0.023 s_angle_d 0.019 s_bond_d 0.005 s_similar_dist s_rigid_bond_adp_cmpnt s_similar_adp_cmpnt s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4302 Nucleic Acid Atoms Solvent Atoms 316 Heterogen Atoms
Software Software Software Name Purpose AMoRE phasing SHELXL refinement MOSFLM data reduction CCP4 data scaling