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 2M74 | pdb_00002m74

1H, 13C and 15N assignments of the four N-terminal domains of human fibrillin-1


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC1.5 mM [U-99% 15N] FUN-EGF395% H2O/5% D2O05.401 atm298
23D 1H-15N NOESY1.5 mM [U-99% 15N] FUN-EGF395% H2O/5% D2O05.401 atm298
33D 1H-15N TOCSY1.5 mM [U-99% 15N] FUN-EGF395% H2O/5% D2O05.401 atm298
42D 1H-1H TOCSY0.5 mM [U-99% 15N] FUN-EGF3100% D2O05.401 atm298
52D DQF-COSY0.5 mM [U-99% 15N] FUN-EGF3100% D2O05.401 atm298
62D 1H-1H NOESY0.5 mM [U-99% 15N] FUN-EGF3100% D2O05.401 atm298
73D HNCA1.5 mM [U-99% 13C; U-99% 15N] FUN-EGF395% H2O/5% D2O05.401 atm298
83D (H)CC(CO)NH1.5 mM [U-99% 13C; U-99% 15N] FUN-EGF395% H2O/5% D2O05.401 atm298
93D HNCO1.5 mM [U-99% 13C; U-99% 15N] FUN-EGF395% H2O/5% D2O05.401 atm298
103D HN(CA)CO1.5 mM [U-99% 13C; U-99% 15N] FUN-EGF395% H2O/5% D2O05.401 atm298
112D 1H-13C HSQC aliphatic1.5 mM [U-99% 13C; U-99% 15N] FUN-EGF3100% D2O05.401 atm298
123D HCCH-TOCSY1.5 mM [U-99% 13C; U-99% 15N] FUN-EGF3100% D2O05.401 atm298
133D 1H-13C NOESY aliphatic1.5 mM [U-99% 13C; U-99% 15N] FUN-EGF3100% D2O05.401 atm298
142D 1H-13C HSQC aromatic1.5 mM [U-99% 13C; U-99% 15N] FUN-EGF3100% D2O05.401 atm298
153D 1H-15N HSQC-NOESY-HSQC1.5 mM [U-99% 15N] FUN-EGF395% H2O/5% D2O05.401 atm298
162D 1H-15N HMQC-J1.5 mM [U-99% 15N] FUN-EGF395% H2O/5% D2O05.401 atm298
172D 1H-15N IPAP-HSQC0.5 mM [U-99% 13C; U-99% 15N] FUN-EGF390% H2O/10% D2O05.401 atm308
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1Home-builthome-built using GE Omega software750
2Home-builthome-built using GE Omega software600
3BrukerAVANCE500
NMR Refinement
MethodDetailsSoftware
simulated annealing, torsion angle dynamicsAn ensemble of 100 structures was generated. Floating chirality of prochiral groups was used for stereospecific assignment., An initial ensemble of 200 structures was using simulated annealing from an extended template using NOE-derived distance restraints with stereospecific assignments. Coordinates of the 10 lowest-energy structures were then used as templates for refinement calculations, including the 'Rama' and 'HBDB' database potentials. The resulting 10 lowest-energy structures were then refined further using RDCs. Separate alignment tensors were used for the two halves of the molecule ('ne1' and 'e2e3'). Alignment tensor parameters were estimated using partially refined structures. The 20 lowest-structures from the final ensemble of 200 structures were selected as the representative structure ensemble.NMRPipe
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipeJune 2006 Sun SolarisDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2peak pickingCcpN_Analysis2.1.5CCPN
3chemical shift assignmentCcpN_Analysis2.1.5CCPN
4structure solutionX-PLOR3.8Brunger
5structure solutionX-PLOR NIH2.29Schwieters, Kuszewski, Tjandra and Clore
6refinementX-PLOR NIH2.29Schwieters, Kuszewski, Tjandra and Clore
7data analysisTALOS+3.3Cornilescu, Delaglio and Bax
8data analysisFelix2.3Accelrys Software Inc.
9refinementX-PLOR