2MID
Solution structure of the CLAVATA encoded peptide of Arabidopsis thaliana - AtCLE10
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 4 mg/mL peptide, 137 mM sodium chloride, 2.7 mM potassium chloride, 10 mM sodium phosphate, 1.8 mM potassium phosphate | 90% H2O/10% D2O | 140 | 7.0 | ambient | 298 | |
2 | 2D 1H-13C HSQC | 4 mg/mL peptide, 137 mM sodium chloride, 2.7 mM potassium chloride, 10 mM sodium phosphate, 1.8 mM potassium phosphate | 90% H2O/10% D2O | 140 | 7.0 | ambient | 298 | |
3 | 2D 1H-1H TOCSY | 4 mg/mL peptide, 137 mM sodium chloride, 2.7 mM potassium chloride, 10 mM sodium phosphate, 1.8 mM potassium phosphate | 90% H2O/10% D2O | 140 | 7.0 | ambient | 298 | |
4 | 2D 1H-1H NOESY | 4 mg/mL peptide, 137 mM sodium chloride, 2.7 mM potassium chloride, 10 mM sodium phosphate, 1.8 mM potassium phosphate | 90% H2O/10% D2O | 140 | 7.0 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 700 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | ARIA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 20 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | ARIA | 2.3 | Linge, O'Donoghue and Nilges |
2 | refinement | ARIA | 2.3 | Linge, O'Donoghue and Nilges |
3 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
4 | chemical shift assignment | NMRView | Johnson, One Moon Scientific | |
5 | data analysis | NMRView | Johnson, One Moon Scientific | |
6 | peak picking | NMRView | Johnson, One Moon Scientific |