2MUS
HADDOCK calculated model of LIN5001 bound to the HET-s amyloid
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | DREAM 4ms | 15 mg/mL [U-100% 13C; U-100% 15N; U-100% 2H] HET-s(218-289)-1 | 100% D2O | 0 | 7.5 | ambient | 278 | |
| 2 | PDSD 50 ms | 15 mg/mL [U-10% 13C; U-100% 15N] HET-s(218-289)-2 | 100% H2O | 0 | 7.5 | ambient | 278 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 600 |
| 2 | Bruker | AVANCE | 850 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| molecular dynamics | TopSpin | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | target function |
| Conformers Calculated Total Number | 200 |
| Conformers Submitted Total Number | 4 |
| Representative Model | 1 (lowest energy) |
| Additional NMR Experimental Information | |
|---|---|
| Details | All experiments were recorded with a rotation at the magic angle |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | processing | TopSpin | Bruker Biospin | |
| 2 | chemical shift assignment | TopSpin | Bruker Biospin | |
| 3 | data analysis | TopSpin | Bruker Biospin | |
| 4 | processing | TopSpin | CCPN | |
| 5 | chemical shift assignment | TopSpin | CCPN | |
| 6 | data analysis | TopSpin | CCPN | |
| 7 | processing | TopSpin | Bruker Biospin | |
| 8 | chemical shift assignment | TopSpin | Bruker Biospin | |
| 9 | data analysis | TopSpin | Bruker Biospin | |
| 10 | processing | TopSpin | CCPN | |
| 11 | chemical shift assignment | TopSpin | CCPN | |
| 12 | data analysis | TopSpin | CCPN | |
| 13 | structure solution | HADDOCK | Alexandre Bonvin | |
| 14 | geometry optimization | HADDOCK | Alexandre Bonvin | |
| 15 | refinement | HADDOCK | Alexandre Bonvin | |
