2MXB
Structure of the transmembrane domain of the mouse erythropoietin receptor
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.5-1 mM [U-100% 15N] protein, 20 mM potassium phosphate, 240 mM [U-100% 15N] DPC | 90% H2O/10% D2O | 20 | 6.5 | ambient | 313 | |
2 | 2D 1H-15N HSQC | 0.5-1 mM [U-100% 15N] protein, 20 mM potassium phosphate, 240 mM [U-100% 15N] DPC | 90% H2O/10% D2O | 20 | 6.5 | ambient | 313 | |
3 | 3D CBCA(CO)NH | 0.8 mM [U-100% 13C; U-100% 15N] protein, 20 mM sodium phosphate, 240 mM [U-2H] DPC | 90% H2O/10% D2O | 20 | 6.5 | ambient | 313 | |
4 | 3D HNCACB | 0.8 mM [U-100% 13C; U-100% 15N] protein, 20 mM sodium phosphate, 240 mM [U-2H] DPC | 90% H2O/10% D2O | 20 | 6.5 | ambient | 313 | |
5 | 3D HNCA | 0.8 mM [U-100% 13C; U-100% 15N] protein, 20 mM sodium phosphate, 240 mM [U-2H] DPC | 90% H2O/10% D2O | 20 | 6.5 | ambient | 313 | |
6 | 3D HNCO | 0.8 mM [U-100% 13C; U-100% 15N] protein, 20 mM sodium phosphate, 240 mM [U-2H] DPC | 90% H2O/10% D2O | 20 | 6.5 | ambient | 313 | |
7 | 3D HBHA(CO)NH | 0.8 mM [U-100% 13C; U-100% 15N] protein, 20 mM sodium phosphate, 240 mM [U-2H] DPC | 90% H2O/10% D2O | 20 | 6.5 | ambient | 313 | |
8 | 3D 1H-15N NOESY | 0.8 mM [U-100% 13C; U-100% 15N] protein, 20 mM sodium phosphate, 240 mM [U-2H] DPC | 90% H2O/10% D2O | 20 | 6.5 | ambient | 313 | |
9 | 3D HCACO | 0.5-1 mM [U-100% 15N] protein, 20 mM potassium phosphate, 240 mM [U-100% 15N] DPC | 90% H2O/10% D2O | 20 | 6.5 | ambient | 313 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 700 |
2 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | SIMULATED ANNEALING WAS STARTED WITH 3500 AND COOL DOWN TO 100 K WITH 15,000 STEPS. STRUCTURE WAS ENERGY MINIMIZED WITH POWELL ENERGY MINIMIZATION. | NMRView |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | peak picking | NMRView | Johnson, One Moon Scientific | |
2 | structure solution | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
3 | collection | TopSpin | Bruker Biospin | |
4 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore |